The possibility of whether the association between enzyme heterozygosity and body size (fork length) is consistent among rainbow trout ( Oncorhynchus mykiss) with different degrees of relationship and is affected by fish age was determined. Six-month-old full-sibs and progeny groups from five and 13 parents of each sex do not show the positive associations between multilocus heterozygosity and fork length which are detectable in larger pooled gamete matings (259 x 25 ci). Moreover, the relationship between heterozygosity at single loci and fork length is inconsistent among families. These data suggest that chromosomal segments, marked by the enzyme loci, are responsible for the phenotypic effects (associative overdominance). Fish age affects both the strength and direction of the association between multilocus heterozygosity and fork length; the association is positive in 6-month-old rainbow trout but is weaker, negative, or differs between the sexes in fish at 1 year. Moreover, the strength of the relationship changes over time in repeated measurements on the same fish. A decline in growth of larger and more heterozygous fish, because of precocial sexual maturation, may partially explain the changing relationship between multilocus heterozygosity and fork length. Sexually mature males are significantly more heterozygous than immature males and show significantly reduced recent growth rates as measured by white muscle RNA concentration. However, females, who rarely mature at 1 year, show significantly higher recent growth rates. Thus, heterozygosity is differentially associated with the allocation of energy resources into somatic and reproductive tissue in male and female rainbow trout.