Genetic variation of the mitochondrial DNA control region across plains bison herds in USA and Canada

Abstract

Once numbering in the tens of millions, bison (Bison bison) have faced a broad range of challenges over the past century, including genetic impacts from the population bottleneck in the 1800s, and significant loss and fragmentation of habitat resulting in little opportunity for population growth on remaining small, geographically isolated reserves. To identify best practices for bison stewardship against this backdrop, managers must understand the genetic composition of existing conservation herds. This study characterized 14 plains bison (Bison bison bison) herds managed by the U.S. Department of Interior and Parks Canada Agency based on complete mtDNA control region sequences. Among 209 bison, we detected 11 major mtDNA control region haplotypes based on nucleotide substitutions and 23 sub-haplotypes where indels are considered. We determined matrilineal relationships between the herds and compared our genetic findings to historic records. The recent common ancestry of modern bison deriving from small, scattered groups combined with gene flow through foundation and translocation events between herds during the last 100 years, is reflected in Fst value (0.21), haplotype (0.48 ± 0.04) and nucleotide (0.004 ± 0.002) diversities, and mean number of pairwise differences (3.38 ± 1.74). Genetic diversity was distributed unevenly among herds, with 21.41% of genetic variation observed between herds. Median joining network, together with trends in the Tajima’s D and Fs tests, revealed two patterns in the recent evolution of mtDNA sequences in bison: mutational process has generated diversity with a Hap 1 haplotype epicenter, and missed mtDNA haplotypes exist in the network due to bottleneck, loss through management practices, or incomplete sampling of specimens across conservation herds. This work significantly expands characterization of the genetic diversity among bison conservation herds, providing additional decision support for managers considering restoring gene flow to achieve long-term species viability.

Genetic diversity of the eastern black rhinoceros (Diceros bicornis michaeli) in Tanzania; implications for future conservation

“…Whether this reflects admixture between subspecies or misclassification would require further investigation. However, The uneven distribution of haplotypes across these populations means that allowing movements between one population to another through natural dispersal could supplement diversity within the less diverse population, such as has been suggested for Bison herds in the USA and Canada to restore gene flow to achieve long-term species viability (Davies et al 2022). On the other hand, managing which animals are allowed to move could also be desirable.…”

Evaluation of DSSAT CROPGRO model on growth and yield of pigeonpea cultivars under different fertigation levels

“…Genetic uniformity or at least reduced genetic divergence in invading species is not frequent in human-mediated biological invasions, but due to bottlenecks and founder effects during the establishment and colonization phase (Gortat et al,2017). Taxa that have experienced significant bottlenecks or founder effects, causing a decline in genetic diversity have frequently exhibited low mitochondrial DNA variation (Davies et al,2022 ). Extreme bottlenecks, either caused by demographic shifts or merely population extension from a limited pool, can potentially wipe out entire mitochondrial lineages or completely wipe out intrapopulation genetic variation in mtDNA, erasing the invasion's history.…”

Genetic diversity of the eastern black rhinoceros (Diceros bicornis michaeli) in Tanzania; implications for future conservation

“…Whether this re ects admixture between subspecies or misclassi cation would require further investigation. However, The uneven distribution of haplotypes across these populations means that allowing movements between one population to another through natural dispersal could supplement diversity within the less diverse population, such as has been suggested for Bison herds in the USA and Canada to restore gene ow to achieve long-term species viability (Davies et al 2022). On the other hand, managing which animals are allowed to move could also be desirable.…”