Genetic Variation of Yellow Barbell (Carasobarbus Luteus (Heckel, 1843)) From Four Populations Using Mitochondrial Dna Coi Gene Sequences

Parmaksız, Arif

doi:10.15666/aeer/1602_16731682

Cited by 11 publications

(6 citation statements)

References 21 publications

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“…Furthermore, this possibility was supported by low nucleotide diversity as well. Another study on mtDNA COI sequence analysis of C. luteus species in the same river system revealed a considerable divergence from neutrality (Parmaksız & Eskici, 2018). However, it was expected that genetic data resulted in greater details because the number of samples and localities were higher in this study.…”

Section: Discussionmentioning

confidence: 69%

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Parmaksız¹

2020

Turk. J. Fish. Aquat. Sci.

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It is substantially important to know genetic structure of fish populations for long term fishery and with regards to conservation strategies. The present study was aimed to reveal the fundamental population genetic data for continuity and conservation of the Yellow barbell (Carasobarbus luteus) stocks, being considered as an economically important endemic fish species in Southeastern Anatolia Region. Therefore, a total number of 108 fish specimens were sampled from 9 localities of Kueik, Euphrates and Tigris river systems and subsequently, genetically analyzed based on mtDNA D-loop region sequencing. In total, 15 polymorphic nucloetide sites and 7 haplotypes were established during the analysis carried out. The mean haplotype (Hd) and nucleotide variation (π) were calculated as 0.373 and 0.00536. The highest values of haplotype and nucleotide variation was observed in Birecik (Hd=0,65152) and Adıyaman population (π =0,01094); respectively. In turns, none haplotype and nucleotide variation was observed in Kilis and Diyarbakır populations. Obtained FST values for examined populations ranged between-0.12389 and 0.15630. All FST values were found to be statistically insignificant for the populations within the same river and significant between some populations originated from different rivers. According to analysis of neutrality tests, Tajima's D values were statistically significant in 4 populations (Samsat, Bozova, Hilvan and Bismil). Obtained, under the present study information on genetic variation and population structure of C. luteus will be useful to plan an effective strategies for conservation and fishery supplementation of the species in the region.

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Section: Discussionmentioning

confidence: 69%

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Parmaksız¹

2020

Turk. J. Fish. Aquat. Sci.

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“…In addition, it was determined that either of mean Tajima's D and Fu's Fs values were negative in the study by Parmaksız and Eksi (2017), on the contrary, both of them were positive in the study by Parmaksız and Eskici (2018). A positive Fu's Fs and Tajima's D test signifies lower levels for both low and high frequency polymorphisms, indicating a decrease in population size (Hu et al, 2016 ).…”

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confidence: 90%

Genetic diversity of Cyprinion macrostomus (Heckel, 1843) populations in the Euphrates and Tigris rivers based on partial cytochrome b sequences of mitochondrial DNA

Parmaksız¹

2018

Indian J. Fish.

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Cyprinion macrostomus (Heckel, 1843), thriving in both Euphrates and Tigris river systems, is an economically important food fish species of the family Cyprinidae. It is important to know genetic structure of fis populations in terms of identification of genetic structure of stocks for facilitating sustainable fishing and conservation strategies.The present study, evaluated genetic structure of C. macrostomus populations in Euphrates and Tigris rivers using mtDNA cytochrome b sequence analysis. A total number of 44 C. macrostomus specimens were collected from Euphrates and Tigris rivers and total DNA was isolated from muscle tissue. Approximately 600 bp of mtDNA cyt b site was amplified by PCR and 8 polymorphic and 8 haplotypes were identified after sequence analysis. Mean haplotype and nucleotide diversity were calculated as 0.738 and 0.00253 respectively. Both populations had similar values in terms of haplotype as well as nucleotide diversity and neutrality tests were also found to be statistically insignificant.

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“…The primer sequence used for amplification of the mtDNA COI gene region was reported by Darabi et al (2014) (COI-625F: 5' TCA ACC AAC CAC AAA GAC ATT GGC AC-3'; COI-625R: 5' GAC TTC TGG GTG GCC AAA GAA TCA-3') [19]. PCR conditions and chemicals were applied according to the study of Parmaksız and Eskici (2018) and the product was obtained [20]. The primer sequence used for the mtDNA cyt b gene region was taken from Briolay et al, (1998) (L15267 F: 5ˈ GTT TGA TCC CGT TTC GTG TA-3ˈ; H15891 R: 5'AAT GAC TTG AAG AAC CAC CGT-3'), PCR conditions and chemicals were applied according to the study of Parmaksız and Şeker (2018) and the product was obtained [21,22].…”

Section: Dna Isolation and Pcrmentioning

confidence: 99%

mtDNA COI and Cyt b Analysis of Carassius auratus (Linnaeus, 1758) Species Living in Atatürk Dam Lake (Turkey)

Parmaksız

Demir

Ulusal

2022

International Journal of Life Sciences and Biotechnology

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Today, biological invasion is one of the leading threats to biodiversity and is an issue that is gaining more and more importance. In recent years, molecular techniques have been widely used in the identification and monitoring of invasive species in many parts of the world. This study aimed to detect the infested species, Carassius auratus, in Atatürk Dam Lake and to reveal the population status. For these purposes, 10 Carassius auratus specimens were randomly selected from Atatürk Dam Lake. After DNA isolation of the selected samples, mtDNA COI and cyt b gene regions were sequenced and analyzed. In this study, sequence analyzes of individuals belonging to the C. auratus species living in Atatürk Dam Lake were performed for the first time using mtDNA COI and cyt b markers. Analyzed sequence results were compared with databases and it was concluded that the results obtained for both mtDNA markers were compatible. No other variation was observed. When the results are evaluated as a whole, it is possible to say that this species has spread recently. In future studies, it is recommended to determine the invasive species populations that are intensely found in Atatürk Dam Lake and other lakes and to determine the necessary strategies to combat these invasive species

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Genetic Variation of Yellow Barbell (Carasobarbus Luteus (Heckel, 1843)) From Four Populations Using Mitochondrial Dna Coi Gene Sequences

Cited by 11 publications

References 21 publications

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Genetic diversity of Cyprinion macrostomus (Heckel, 1843) populations in the Euphrates and Tigris rivers based on partial cytochrome b sequences of mitochondrial DNA

mtDNA COI and Cyt b Analysis of Carassius auratus (Linnaeus, 1758) Species Living in Atatürk Dam Lake (Turkey)

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