2023
DOI: 10.1186/s12870-023-04652-7
|View full text |Cite
|
Sign up to set email alerts
|

Genome- and transcriptome-wide identification of trehalose-6-phosphate phosphatases (TPP) gene family and their expression patterns under abiotic stress and exogenous trehalose in soybean

Wenjing Shao,
Xinlin Zhang,
Zhiheng Zhou
et al.

Abstract: Background Trehalose-6-phosphate phosphatase (TPP) is an essential enzyme catalyzing trehalose synthesis, an important regulatory factor for plant development and stress response in higher plants. However, the TPP gene family in soybean has not been reported. Results A comprehensive analysis of the TPP gene family identified 18 GmTPPs classified into eight groups based on the phylogenetic relationships and the conservation of protein in six monocot… Show more

Help me understand this report
View preprint versions

Search citation statements

Order By: Relevance

Paper Sections

Select...
1
1

Citation Types

1
1
0

Year Published

2024
2024
2024
2024

Publication Types

Select...
3

Relationship

0
3

Authors

Journals

citations
Cited by 3 publications
(2 citation statements)
references
References 65 publications
1
1
0
Order By: Relevance
“…During our analysis, we discovered 12 pairs of segmental duplicated AhTPP genes, while no tandem duplication event was observed ( Figure 3 A and Table S2 ), indicating that segmental duplication was another major driver for the expansion of the AhTPPs family. Similar results were also found in soybean [ 33 ] and cotton [ 34 ]. Furthermore, the Ka/Ks ratio was less than one for all pairs of duplicated genes, indicating that AhTPPs underwent a stringent purifying selection ( Table S2 ).…”
Section: Discussionsupporting
confidence: 86%
See 1 more Smart Citation
“…During our analysis, we discovered 12 pairs of segmental duplicated AhTPP genes, while no tandem duplication event was observed ( Figure 3 A and Table S2 ), indicating that segmental duplication was another major driver for the expansion of the AhTPPs family. Similar results were also found in soybean [ 33 ] and cotton [ 34 ]. Furthermore, the Ka/Ks ratio was less than one for all pairs of duplicated genes, indicating that AhTPPs underwent a stringent purifying selection ( Table S2 ).…”
Section: Discussionsupporting
confidence: 86%
“…To study the phylogenetic analysis of peanut TPP family members, we retrieved TPP proteins from A. thaliana (https://www.arabidopsis.org, accessed on 10 August 2023), G. hirsutum (https://cottonfgd.org, accessed on 10 August 2023), P. tomentosa (https:// phytozome.jgi.doe.gov/pz/portal.html/, accessed on 10 August 2023), G. max [33], A. duranensis and A. ipaensis (https://www.peanutbase.org/, accessed on 10 August 2023). Multiple alignment of TPP protein sequences from both A. hypogaea and the other six species was performed using MAFFT v7.490 with default settings [43].…”
Section: Phylogenetic Analysismentioning
confidence: 99%