Genome annotation and comparative functional analysis of genomic islands in Bordetella pertussis Tohama I, Bordetella parapertussis 12822, and Bordetella bronchiseptica RB50 genomes

Sharn, Hari Om; Singh, Dev Bukhsh; Yadav, Pramod Kumar; Gautam, Budhayash; Kumar, Vipin; Singh, Satendra

doi:10.1007/s13721-023-00418-1

Netw Model Anal Health Inform Bioinforma

2023

DOI: 10.1007/s13721-023-00418-1

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Genome annotation and comparative functional analysis of genomic islands in Bordetella pertussis Tohama I, Bordetella parapertussis 12822, and Bordetella bronchiseptica RB50 genomes

Hari Om Sharn

Dev Bukhsh Singh

Pramod Kumar Yadav

et al.

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2024

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Computational approach to identify novel genomic features conferring high fitness in Bacillus atrophaeus CNY01 and Bacillus velezensis AK-0 associated with plant growth promotion (PGP) in apple

Das,

Gautam,

Yadav

et al. 2024

BMC Plant Biol

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A comparative genomic analysis approach provides valuable information about genetic variations and evolutionary relationships among microorganisms, aiding not only in the identification of functional genes responsible for traits such as pathogenicity, antibiotic resistance, and metabolic capabilities but also in enhancing our understanding of microbial genomic diversity and their ecological roles, such as supporting plant growth promotion, thereby enabling the development of sustainable strategies for agriculture. We used two strains from different Bacillus species, Bacillus velezensis AK-0 and Bacillus atrophaeus CNY01, which have previously been reported to have PGP activity in apple, and performed comparative genomic analysis to understand their evolutionary process and obtain a mechanistic understanding of their plant growth-promoting activity. We identified genomic features such as mobile genetic elements (MGEs) that encode key proteins involved in the survival, adaptation and growth of these bacterial strains. The presence of genomic islands and intact prophage DNA in Bacillus atrophaeus CNY01 and Bacillus velezensis AK-0 suggests that horizontal gene transfer has contributed to their diversification and acquisition of adaptive traits, enhancing their evolutionary advantage. We also identified novel DNA motifs that are associated with key physiological processes and metabolic pathways. Supplementary Information The online version contains supplementary material available at 10.1186/s12870-024-05795-x.

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Computational approach to identify novel genomic features conferring high fitness in Bacillus atrophaeus CNY01 and Bacillus velezensis AK-0 associated with plant growth promotion (PGP) in apple

Das,

Gautam,

Yadav

et al. 2024

BMC Plant Biol

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show abstract

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Genome annotation and comparative functional analysis of genomic islands in Bordetella pertussis Tohama I, Bordetella parapertussis 12822, and Bordetella bronchiseptica RB50 genomes

Cited by 1 publication

References 33 publications

Computational approach to identify novel genomic features conferring high fitness in Bacillus atrophaeus CNY01 and Bacillus velezensis AK-0 associated with plant growth promotion (PGP) in apple

Computational approach to identify novel genomic features conferring high fitness in Bacillus atrophaeus CNY01 and Bacillus velezensis AK-0 associated with plant growth promotion (PGP) in apple

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