Genome Sequence of Human Rhinovirus A22, Strain Lancaster/2015

Atkinson, Kate V.; Bishop, L.A.; Rhodes, Glenn; Salez, Nicolas; McEwan, Neil R.; Hegarty, Matthew J.; Robey, Julie; Harding, Nicola; Wetherell, Simon; Lauder, Robert M.; Pickup, Roger W.; Wilkinson, Mark; Gatherer, Derek

doi:10.1128/genomea.01713-16

Cited by 1 publication

(2 citation statements)

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“…Within other sequencing pools we also detected the complete genomes of novel strains of human rhinovirus A22 (ref. 8 ), human papillomavirus 23 (ref. 9 ) and human papillomavirus 20 (ref.…”

Section: Background and Summarymentioning

confidence: 99%

“…Therefore, although we have previously used the data to derive 3 complete short viral genomes (ref. 8–10 ), detectable genomes of cellular microbes are more likely to be fragmentary. Nevertheless, the dataset may be used for the discovery of further novel viruses, or for comparative studies of the whole virome or bacteriome between the 7 different clinical states defined in the 9 samples.…”

Section: Background and Summarymentioning

confidence: 99%

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Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014–2015

et al. 2017

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Nasopharyngeal swabs were taken from volunteers attending a general medical practice and a general hospital in Lancaster, UK, and at Lancaster University, in the winter of 2014–2015. 51 swabs were selected based on high RNA yield and allocated to deep sequencing pools as follows: patients with chronic obstructive pulmonary disease; asthmatics; adults with no respiratory symptoms; adults with feverish respiratory symptoms; adults with respiratory symptoms and presence of antibodies against influenza C; paediatric patients with respiratory symptoms (2 pools); adults with influenza C infection (2 pools), giving a total of 9 pools. Illumina sequencing was performed, with data yields per pool in the range of 345.6 megabases to 14 gigabases after removal of reads aligning to the human genome. The data were deposited in the Sequence Read Archive at NCBI, and constitute a resource for study of the viral, bacterial and fungal metagenome of the human nasopharynx in healthy and diseased states and comparison with other metagenomic studies on the human respiratory tract.

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“…Within other sequencing pools we also detected the complete genomes of novel strains of human rhinovirus A22 (ref. 8 ), human papillomavirus 23 (ref. 9 ) and human papillomavirus 20 (ref.…”

Section: Background and Summarymentioning

confidence: 99%

Section: Background and Summarymentioning

confidence: 99%