Genome Sequence of the Plant Growth-Promoting Rhizobacterium
            <i>Bacillus</i>
            sp. Strain JS

Song, Ju Yeon; Kim, Hyun A; Kim, Ji Seoung; Kim, Seon‐Young; Jeong, Haeyoung; Kang, Sung Gyun; Kim, Byung Kwon; Kwon, Soon Kyeong; Lee, Choong Hoon; Dong, Yu; Kim, Beom Seok; Kim, Sun Hyung; Kwon, Suk Yoon; Kim, Jihyun F.

doi:10.1128/jb.00676-12

Cited by 36 publications

(25 citation statements)

References 19 publications

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“…In vitro investigations showed that silver ion surfaces, despite their powerful antibacterial efficacy, did not impair the growth of gingival fibroblast or embryonic cells 42,52,57,58,94) . Silver-implanted surfaces exhibit non-specific antimicrobial activity without toxicity to mammalian cells at the given concentrations 14,41,42) .…”

Section: Silver-implanted Surfacesmentioning

confidence: 99%

“…Some authors did not find a convincing decrease or even an increase in bacterial colonization on nanomaterials in comparison to untreated titanium 59,134,136,137) . Others found reductions in bacterial counts in vitro of up to 90% compared to commercially pure titanium on nano-Ti surfaces and of up to 100% for nano-AgHA when tested against E. coli, S. epidermidis and S. aureus [52][53][54][55][56]62,138) . It has recently been shown that a titanium nanotube surface exhibited antimicrobial properties and down-regulated the glycosyltransferase genes of S. mutans 171) .…”

Section: Nanoscale Surfacesmentioning

confidence: 99%

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Antimicrobial dental implant functionalization strategies —A systematic review

Grischke

Eberhard

Stiesch

2016

Dental Materials Journal

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Section: Silver-implanted Surfacesmentioning

confidence: 99%

Section: Nanoscale Surfacesmentioning

confidence: 99%

Antimicrobial dental implant functionalization strategies —A systematic review

Grischke

Eberhard

Stiesch

2016

Dental Materials Journal

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“…NGS have recently been employed to study the genomes of several PGPR such as Pseudomonas sp 12, . Bacillus sp 13,. and Paenibacillus polymyxa 14.…”

mentioning

confidence: 99%

Whole genome analysis of halotolerant and alkalotolerant plant growth-promoting rhizobacterium Klebsiella sp. D5A

Liu

Wang

Hou

et al. 2016

Sci Rep

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This research undertook the systematic analysis of the Klebsiella sp. D5A genome and identification of genes that contribute to plant growth-promoting (PGP) traits, especially genes related to salt tolerance and wide pH adaptability. The genome sequence of isolate D5A was obtained using an Illumina HiSeq 2000 sequencing system with average coverages of 174.7× and 200.1× using the paired-end and mate-pair sequencing, respectively. Predicted and annotated gene sequences were analyzed for similarity with the Kyoto Encyclopedia of Genes and Genomes (KEGG) enzyme database followed by assignment of each gene into the KEGG pathway charts. The results show that the Klebsiella sp. D5A genome has a total of 5,540,009 bp with 57.15% G + C content. PGP conferring genes such as indole-3-acetic acid (IAA) biosynthesis, phosphate solubilization, siderophore production, acetoin and 2,3-butanediol synthesis, and N2 fixation were determined. Moreover, genes putatively responsible for resistance to high salinity including glycine-betaine synthesis, trehalose synthesis and a number of osmoregulation receptors and transport systems were also observed in the D5A genome together with numerous genes that contribute to pH homeostasis. These genes reveal the genetic adaptation of D5A to versatile environmental conditions and the effectiveness of the isolate to serve as a plant growth stimulator.

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“…StnH and StnQ show high similarities to putative carbamoyl-phosphate synthetase ABB37219 (34% identity) from Desulfovibrio alaskensis G20 and carbamoyl transferase TobZ (53% identity) in tobramycin biosynthesis from Streptoalloteichus tenebrarius [26], respectively. StnG is a putative glycosyl transferse similar to YP_006230477 (20.9% identity) from Bacillus strain [27].…”

Section: Functional Analyses Of Individual St Genesmentioning

confidence: 99%