Genome-wide phylogenetic and genetic evolutionary analyses of mitochondria in Hypoderma bovis and H. sinense on the Qinghai-Tibetan Plateau

Chen, Wangkai; Zhang, Haining; Meng, Ru; Zhang, Xueyong; Duo, Hong; Guo, Zhihong; Shen, Xiuying; Chen, Changjiang; Li, Zhi; Fu, Yong

doi:10.1007/s00436-023-08060-6

Parasitol Res

2023

DOI: 10.1007/s00436-023-08060-6

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Genome-wide phylogenetic and genetic evolutionary analyses of mitochondria in Hypoderma bovis and H. sinense on the Qinghai-Tibetan Plateau

Wangkai Chen,

Haining Zhang,

Ru Meng

et al.

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2024

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Cited by 2 publications

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Analysis of the Genomic Sequences and Metabolites of Bacillus velezensis YA215

Yu,

Shen,

Chen

et al. 2024

Biochem Genet

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Discovering more novel antimicrobial compounds has become an keen research problem. In this study, YA215 genome was sequenced by the Illumina HiSeq + PacBio sequencing platform. Genome assembly was performed by Unicycler software and the gene clusters responsible for secondary metabolite biosynthesis were predicted by antiSMASH. The genome comprised 3976514 bp and had a 46.56% G + C content. 3809 coding DNA sequences, 27 rRNAs, 86 tRNAs genes and 79 sRNA were predicted. Strain YA215 was re-identi ed as Bacillus velezensis based on ANI and OrthoANI analysis. In the COG database, 23 functional groups from 3090 annotations were predicted. In the GO database, 2654 annotations were predicted. 2486 KEGG annotations linked 41 metabolic pathways. Glycosyl transferases, polysaccharide lyases, auxiliary activities, glycoside hydrolases, carbohydrate esterases and carbohydrate-binding modules were predicted among the 127 annotations in the CAZy database. AntiSMASH analysis predicted that strain B. velezensis YA215 boasted 13 gene clusters involved in synthesis of antimicrobial secondary metabolites including surfactin, fengycin, macrolactin H, bacillaene, di cidin, bacillibactin, bacilysin, and plantazolicin. Three of the gene clusters (gene cluster 5, gene cluster 9 and gene cluster 10) have the potential to synthesize unknown compounds. The research ndings have the potential to contribute signi cantly to the development of natural novel compounds with antimicrobial activity in B. velezensis YA215.

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Analysis of the Genomic Sequences and Metabolites of Bacillus velezensis YA215

Yu,

Shen,

Chen

et al. 2024

Biochem Genet

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Morphological observation, molecular identification and evolutionary analysis of Hydatigera kamiyai found in Neodon fuscus from the Qinghai-Tibetan plateau

Zhou,

Zhang,

Chen

et al. 2024

Infection, Genetics and Evolution

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Genome-wide phylogenetic and genetic evolutionary analyses of mitochondria in Hypoderma bovis and H. sinense on the Qinghai-Tibetan Plateau

Cited by 2 publications

References 75 publications

Analysis of the Genomic Sequences and Metabolites of Bacillus velezensis YA215

Analysis of the Genomic Sequences and Metabolites of Bacillus velezensis YA215

Morphological observation, molecular identification and evolutionary analysis of Hydatigera kamiyai found in Neodon fuscus from the Qinghai-Tibetan plateau

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