2014
DOI: 10.1016/j.ygeno.2014.09.010
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Genome-wide transcriptome analysis of human epidermal melanocytes

Abstract: Because human epidermal melanocytes (HEMs) provide critical protection against skin cancer, sunburn, and photoaging, a genome-wide perspective of gene expression in these cells is vital to understanding human skin physiology. In this study we performed high throughput sequencing of HEMs to obtain a complete data set of transcript sizes, abundances, and splicing. As expected, we found that melanocyte specific genes that function in pigmentation were among the highest expressed genes. We analyzed receptor, ion c… Show more

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Cited by 37 publications
(42 citation statements)
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“…The identity of the putative GPCR that mediates the UVA phototransduction cascade remains unknown, but members of the retinal-dependent, light-sensitive opsin family are ideal candidates. Coincidentally, in HEMs, we and others have found expression of mRNA corresponding to several opsins [16][17][18][19][20]; opsin3 (OPN3), which has unknown physiological function, has significantly higher mRNA expression than any other detected opsin [18].…”
Section: Introductionmentioning
confidence: 97%
“…The identity of the putative GPCR that mediates the UVA phototransduction cascade remains unknown, but members of the retinal-dependent, light-sensitive opsin family are ideal candidates. Coincidentally, in HEMs, we and others have found expression of mRNA corresponding to several opsins [16][17][18][19][20]; opsin3 (OPN3), which has unknown physiological function, has significantly higher mRNA expression than any other detected opsin [18].…”
Section: Introductionmentioning
confidence: 97%
“…The identity of the putative G protein-coupled receptor (GPCR) that mediates the UVA phototransduction cascade remains unknown, but members of the retinal-dependent, light-sensitive opsin family are ideal candidates. Coincidentally, in HEMs, we and others have found expression of messenger RNA (mRNA) corresponding to several opsins (16)(17)(18)(19)(20): Among these, opsin 3 (OPN3), which has an unknown physiological function, has significantly higher mRNA expression than any other detected opsin (18).…”
mentioning
confidence: 94%
“…These genes showed a pattern of up-regulation due to hybridization and also further up-regulation effected by UVB exposure. Among these 18 genes, 4 genes are related to melanin synthesis ( mitfa , tyr , tyrp1a , dct ), 3 genes are related to melanosome transport ( rab27 , rab38a , pmela ), 4 genes are related to pigmentation ( slc2a11b , slc24a5 , oca2, pax3b ), and 4 genes are melanoma/melanocyte marker ( tspan10 , slc45a2 , ptn , 2,8-sialyltranferase ) (Kobayashi et al, 1994; Kuroda et al, 2005; Kang et al, 2007; Zhang et al, 2013; Haltaufderhyde and Oancea 2014; Kimura et al, 2014; Liu et al, 2014; Morice-Picard et al, 2014; Choi et al, 2015; Eaton et al, 2015; Lindsay et al, 2015). The remaining two genes ( CA10 and kirrel3l ) are not well studied and their functions poorly charactrized.…”
Section: Resultsmentioning
confidence: 99%