Genome-Wide Transcriptomic and Proteomic Exploration of Molecular Regulations in Quinoa Responses to Ethylene and Salt Stress

Ma, Qian; Su, Chunxue; Dong, Chun-Hai

doi:10.3390/plants10112281

Cited by 16 publications

(11 citation statements)

References 60 publications

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“…Particularly those synthesized in the ornithine and raffinose pathways but also the accumulation of soluble sugars and proline, which also contribute to the cellular osmotic adjustment (reviewed by Bascunan-Godoy et al , (2016) and Hinojosa et al , (2018)). This enhanced accumulation of ROS detoxification enzymes has been recently described in 4-weeks old quinoa seedlings subjected to salinity stress (Ma et al , 2021). In line with this, numerous antioxidant enzymes overrepresented in seeds harvested from rainfed conditions were categorized into catabolic process BP-GO term, such as L-ascorbate peroxidases (AUR62044027-RA, AUR62003342-RA), peroxidase (POD) (AUR62024052-RA), cytochrome C peroxidase (AUR62003343-RA), peroxidase C1C (AUR62026666-RA), peroxidase 4 (AUR62012343-RA, AUR62009723-RA), chatepsin B (AUR62001249-RA), plastidial pyruvate kinase 2 (AUR62021072-RA), peroxiredoxin-2E (AUR62037884-RA), fructose-bisphosphate aldolases 3 (AUR62033531-RA, AUR62028580-RA), glutathione S-transferase (GST) (AUR62008599-RA) and Cu/Zn superoxide dismutase (SOD) (AUR62000929-RA).…”

Section: Go Terms Showed Differential Enrichment Of Antioxidant-relat...mentioning

confidence: 55%

Shotgun proteomics of quinoa seeds reveals chitinases enrichment under rainfed conditions

Reguera

Poza-Viejo

Redondo‐Nieto

et al. 2022

Preprint

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Quinoa is an Andean crop whose cultivation has been extended to many different parts of the world in the last decade. It shows a great capacity for adaptation to diverse climate conditions, including environmental stressors, and moreover, the seeds are very nutritious in part due to their high protein content which is rich in essential amino acids. They also contain good amounts of other nutrients such as unsaturated fatty acids, vitamins, or minerals and are gluten-free seeds. Also, the use of quinoa hydrolysates and peptides has been linked to numerous health benefits. Altogether, these aspects have situated quinoa as a crop able to contribute to food security worldwide. Aiming to deepen our understanding of the protein quality and function of quinoa seeds and how they can vary when this crop is subjected to water-limiting conditions, a shotgun proteomics analysis was performed to obtain the proteomes of quinoa seeds harvested from two different water regimes in field: rainfed and irrigated conditions. Overrepresented proteins in seeds from each field condition were analysed, and the enrichment of chitinase-related proteins in seeds harvested from rainfed conditions was found. These proteins are described as pathogen-related proteins and can be accumulated under abiotic stress. Thus, our findings suggest that chitinase-like proteins in quinoa seeds can be potential biomarkers of drought. Also, this study points to the need for further research to unveil their role in conferring tolerance when coping with water-deficient conditions.

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Section: Go Terms Showed Differential Enrichment Of Antioxidant-relat...mentioning

confidence: 55%

Shotgun proteomics of quinoa seeds reveals chitinases enrichment under rainfed conditions

Reguera

Poza-Viejo

Redondo‐Nieto

et al. 2022

Preprint

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“…However, recent experiments with Arabidopsis have documented that ACC acts as a signaling molecule and is able to control seedling growth independently of ethylene [254]. This finding was supported by a molecular analysis that correlated with ethylene and ACCmediated regulation of gene expression in quinoa under hyperosmotic salinity [255]. Based on the general observation that ACC deaminase producing bacteria attenuate adverse effects of long-term stress, such as salinization of soil, it was concluded that in these situations ACC production will exceed its degradation, and its concentration in plants will finally reach a level to inhibit the synthesis of essential metabolites [256].…”

Section: Ethylene and Accmentioning

confidence: 82%

From Soil Amendments to Controlling Autophagy: Supporting Plant Metabolism under Conditions of Water Shortage and Salinity

Koyro

Huchzermeyer

2022

Plants

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Crop resistance to environmental stress is a major issue. The globally increasing land degradation and desertification enhance the demand on management practices to balance both food and environmental objectives, including strategies that tighten nutrient cycles and maintain yields. Agriculture needs to provide, among other things, future additional ecosystem services, such as water quantity and quality, runoff control, soil fertility maintenance, carbon storage, climate regulation, and biodiversity. Numerous research projects have focused on the food–soil–climate nexus, and results were summarized in several reviews during the last decades. Based on this impressive piece of information, we have selected only a few aspects with the intention of studying plant–soil interactions and methods for optimization. In the short term, the use of soil amendments is currently attracting great interest to cover the current demand in agriculture. We will discuss the impact of biochar at water shortage, and plant growth promoting bacteria (PGPB) at improving nutrient supply to plants. In this review, our focus is on the interplay of both soil amendments on primary reactions of photosynthesis, plant growth conditions, and signaling during adaptation to environmental stress. Moreover, we aim at providing a general overview of how dehydration and salinity affect signaling in cells. With the use of the example of abscisic acid (ABA) and ethylene, we discuss the effects that can be observed when biochar and PGPB are used in the presence of stress. The stress response of plants is a multifactorial trait. Nevertheless, we will show that plants follow a general concept to adapt to unfavorable environmental conditions in the short and long term. However, plant species differ in the upper and lower regulatory limits of gene expression. Therefore, the presented data may help in the identification of traits for future breeding of stress-resistant crops. One target for breeding could be the removal and efficient recycling of damaged as well as needless compounds and structures. Furthermore, in this context, we will show that autophagy can be a useful goal of breeding measures, since the recycling of building blocks helps the cells to overcome a period of imbalanced substrate supply during stress adjustment.

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“…A comprehensive review article on ethylene and salt stress tolerance was recently published, summarizing the findings up to 2021 [ 83 ], so only more recent publications are discussed here. A genome-wide transcriptome and proteome analysis in quinoa to examine its ethylene-regulated salt tolerance revealed involvement of three ERFs and promotion of ROS by ethylene-enhanced SOD activity [ 84 ]. Furthermore, the authors showed that a variety of transporters (including a high-affinity K + transporter, four nitrate and phosphate transporters, a cation/H + antiporter, a Na + /Ca 2+ exchanger, and an aquaporin) were involved.…”

Section: Ethylene and Jasmonates Action And Response Mechanism Under ...mentioning

confidence: 99%

Ethylene and Jasmonates Signaling Network Mediating Secondary Metabolites under Abiotic Stress

Pérez-Llorca

Pollmann

Müller

2023

IJMS

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Plants are sessile organisms that face environmental threats throughout their life cycle, but increasing global warming poses an even more existential threat. Despite these unfavorable circumstances, plants try to adapt by developing a variety of strategies coordinated by plant hormones, resulting in a stress-specific phenotype. In this context, ethylene and jasmonates (JAs) present a fascinating case of synergism and antagonism. Here, Ethylene Insensitive 3/Ethylene Insensitive-Like Protein1 (EIN3/EIL1) and Jasmonate-Zim Domain (JAZs)-MYC2 of the ethylene and JAs signaling pathways, respectively, appear to act as nodes connecting multiple networks to regulate stress responses, including secondary metabolites. Secondary metabolites are multifunctional organic compounds that play crucial roles in stress acclimation of plants. Plants that exhibit high plasticity in their secondary metabolism, which allows them to generate near-infinite chemical diversity through structural and chemical modifications, are likely to have a selective and adaptive advantage, especially in the face of climate change challenges. In contrast, domestication of crop plants has resulted in change or even loss in diversity of phytochemicals, making them significantly more vulnerable to environmental stresses over time. For this reason, there is a need to advance our understanding of the underlying mechanisms by which plant hormones and secondary metabolites respond to abiotic stress. This knowledge may help to improve the adaptability and resilience of plants to changing climatic conditions without compromising yield and productivity. Our aim in this review was to provide a detailed overview of abiotic stress responses mediated by ethylene and JAs and their impact on secondary metabolites.

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Genome-Wide Transcriptomic and Proteomic Exploration of Molecular Regulations in Quinoa Responses to Ethylene and Salt Stress

Cited by 16 publications

References 60 publications

Shotgun proteomics of quinoa seeds reveals chitinases enrichment under rainfed conditions

Shotgun proteomics of quinoa seeds reveals chitinases enrichment under rainfed conditions

From Soil Amendments to Controlling Autophagy: Supporting Plant Metabolism under Conditions of Water Shortage and Salinity

Ethylene and Jasmonates Signaling Network Mediating Secondary Metabolites under Abiotic Stress

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