60Mutations that alter signaling of RAS/MAPK-family proteins give rise to a group 61 of Mendelian diseases known as RASopathies, but the matrix of genotype-phenotype 62 relationships is still incomplete, in part because there are many RAS-related proteins, 63 and in part because the phenotypic consequences may be variable and/or pleiotropic.
64Here, we describe a cohort of ten cases, drawn from six clinical sites and over 16,000 65 sequenced probands, with de novo protein-altering variation in RALA, a RAS-like small 66 GTPase. All probands present with speech and motor delays, and most have intellectual 67 disability, low weight, short stature, and facial dysmorphism. The observed rate of de 68 novo RALA variants in affected probands is significantly higher (p=4.93 x 10 -11 ) than 69 expected from the estimated mutation rate. Further, all de novo variants described 70 here affect conserved residues within the GTP/GDP-binding region of RALA; in fact, six 71 alleles arose at only two codons, Val25 and Lys128. We directly assayed GTP hydrolysis 72 and RALA effector-protein binding, and all but one tested variant significantly reduced 73 both activities. The one exception, S157A, reduced GTP hydrolysis but significantly 74 increased RALA-effector binding, an observation similar to that seen for oncogenic RAS 75 variants. These results show the power of data sharing for the interpretation and 76 analysis of rare variation, expand the spectrum of molecular causes of developmental 77 disability to include RALA, and provide additional insight into the pathogenesis of78 human disease caused by mutations in small GTPases.79 80 81 5 82 Author Summary 83 While many causes of developmental disabilities have been identified, a large number of 84 affected children cannot be diagnosed despite extensive medical testing. Previously 85 unknown genetic factors are likely to be the culprits in many of these cases. Using DNA 86 sequencing, and by sharing information among many doctors and researchers, we have 87 identified a set of individuals with developmental problems who all have changes to the 88 same gene, RALA. The affected individuals all have similar symptoms, including 89 intellectual disability, speech delay (or no speech), and problems with motor skills like 90walking. In nearly all of these cases (10 of 11), the genetic change found in the child was 91 not inherited from either parent. The locations and biological properties of these 92 changes suggest that they are likely to disrupt the normal functions of RALA and cause 93 significant health problems. We also performed experiments to show that the genetic 94 changes found in these individuals alter two key functions of RALA. Together, we have 95 provided evidence that genetic changes in RALA can cause DD/ID. These results will 96 allow doctors and researchers to identify additional children with the same condition, 97 providing a clinical diagnosis to these families and leading to new research 98 opportunities. 99 100 101 Developmental delay and intellectual disabili...