This study comprised of five different integrated fertilizers of calcium nitrate Ca(NO3)2 with ammonium sulphate (NH4)2SO4 ratios (0%:100%, 10%:90%, 20%:80%, 30%:70%, and 40%:60%) to enhance the physico-chemical properties, and the antioxidant and nutritional compounds of pomegranate fruits cv. ‘Wonderful’. The results discovered that the application of Ca(NO3)2: (NH4)2SO4 in different ratios significantly affected all measured parameters. Among integrated fertilizers, the 30%:70% combination showed an increment of 10.8% in fruit weight, 2.9% in fruit length, 11.8% in fruit volume, and 7.0% in fruit diameter. Similarly, total soluble solids, vitamin C, anthocyanin, total sugars, and reduced sugars, were also increased by 11.2%, 14.6%, 20.2%, 7.4%, and 5.2%, respectively. Likewise, values of both color variations from green to red (a*) and from blue to yellow (b*), and chroma, were also increased by 13.8%, 16.6%, and 14.4%, respectively. Moreover, the application of Ca(NO3)2:(NH4)2SO4 at a ratio of 40%:60% showed 25.1% decrease in titratable acidity, and 45.4% and 27.0% increase in maturity index and peel luminosity, respectively. Additionally, the 30%:70% combination showed an increment of 30.9% in total phenolic content, 70.5% in total tannin content, and 43.6% in total flavonoid content. Additionally, it showed 25.8% and 1.7% decrease in pH and moisture content, respectively. Moreover, P, K, Ca, Mg, Na, Fe, Mn, Zn, Cu, and Ni in fruit increased by different increments by application of the 30%:70% with an increasing range of 28% to 175%. A non-reducing sugar increase was observed at an application of Ca(NO3)2:(NH4)2SO4 at a ratio of 20%:80% by 47.0%. The findings of this study suggest that using calcium nitrate with ammonium sulphate at a ratio of 30%:70%, using the fertigation approach during the growth season, could be a safe, natural, and novel method for the pomegranate cv. ‘Wonderful’ to improve fruit quality, and its amount of antioxidants—specifically, phenolics, vitamin C, anthocyanin, and fruit minerals—with health benefits at harvest.