River inlets, deltas, and estuaries represent delicate ecosystems highly susceptible to climate change impacts. While significant progress has been made in understanding the morphodynamics of these environments in recent decades, the development of models still requires thorough testing and data integration. In this context, remote sensing emerges as a potent tool, providing crucial data and the ability to monitor temporal changes. In this paper, an integrated approach combining remote sensing and morphodynamic modeling is proposed to assess river systems comprehensively. By utilizing multispectral or RGB optical imagery from satellites or UAVs for river classification and remotely derived bathymetry, echo sounder data for ground truth, and photogrammetric modeling of emerged areas, we outline a procedure to create an integrated and continuous digital terrain model (DTM) of a riverbed, paying particular attention to the wet–dry interface. This method enables us to identify the river centerline, its width, and its slope variations. Additionally, by applying a linear morphodynamic model that considers the spatial variability of river morphology commonly found in estuarine environments, it is possible to predict the wavelength and migration rate of sediment bars. This approach has been successfully applied to recreate the DTM and monitor the morphodynamics of the seaward reach of the Roya River (Italy).