Due to their small size and flight regime, coupling of aerodynamics, structural dynamics, and flight dynamics is critical for Micro Aerial Vehicles. This paper presents a computational framework for simulating structural models of varied fidelity and a Navier-Stokes solver, aimed at simulating flapping and flexible wings. The structural model utilizes either (i) the in-house developed UM/NLABS, which decomposes the equations of 3-D elasticity into cross-sectional and spanwise analyses for slender wings; or (ii) MSC.Marc, which is a commercial finite element solver capable of modeling geometrically-nonlinear structures of arbitrary geometry.