“…We took advantage of these well-documented changes to develop quantitative, fluorescence-based anatomic methods for detection of structural correlates of plasticity during learning. Fluorescence-based synapse analysis leverages the extended color palette of fluorescent proteins as well as the broad availability of confocal microscopy for analysis, and molecular genetic reagents can selectively label targeted cell types, critical for defining circuit-specific changes (Gross et al, 2013;Fortin et al, 2014;Kuljis et al, 2019Kuljis et al, , 2021Bensussen et al, 2020;Graves et al, 2021). In addition, compared with electron microscopy (EM; Bock et al, 2011;Kasthuri et al, 2015;Rodriguez-Moreno et al, 2018), fluorescence-based analyses are amenable to rapid analysis of large numbers of subjects, critical for studies where there is substantial variability in synapse density (Chandrasekaran et al, 2015) or behavior (Bernhard et al, 2020;Gilad and Helmchen, 2020).…”