Background Endoparasites of the canine gastrointestinal and respiratory tract represent a wide range of protozoans and helminths. They are causative agents of different serious diseases of animals and many of them also pose zoonotic risks to human health. The education of dog owners and their families with the principles of human and animal health protection may especially prevent the spread of zoonoses such giardiosis, toxocarosis, echinococcosis and Taenia crassiceps infection. Pulmonary nematods are not zoonotic but they can cause serious and potentially fatal disease in dogs.MethodsThree hundred ninety-one samples of canine faeces and 398 completed questionnaires were collected. The questionnaires comprised of description of individual dogs and detailed data about the way the dogs were kept and their deworming. Samples were examined by flotation, larvoscopy by Baermann and PCR method.ResultsWe confirmed infection of Giardia spp., Isospora ohioensis, Neospora caninum/Hammondia heydorni, Ancylostoma spp., Angiostrongylus vasorum, Capillaria spp., Crenosoma vulpis, Toxocara canis, Toxascaris leonina, Trichuris spp. and Taenia spp. Sequences were obtained for 3 of them confirming T. crassiceps. No deworming treatment was recorded for insignificant number of dogs. Dog owners most often used multicomponent endoparasitics.ConclusionsMost of the dogs were dewormed irregularly and antiparasitics were administered namely twice a year, so monthly intervals were not performed in the group of dogs at risk for e.g. possibility of predation. Consumption of antiparasitic drugs cannot ensure the protection of dogs, their owners and other people, unless not applied purposefully, with appropriate knowledge and on the basis of the veterinarian's advice.