Seawater transported into the South Atlantic from the Indian Ocean via “Agulhas leakage” modulates global ocean circulation and has been linked to glacial‐interglacial climate cycles. However, constraining past Agulhas leakage has been a challenge. We sampled a transect of the Cape Basin in winter 2017 that intersected a mature Agulhas eddy and found that the 15N/14N ratio (δ15N) of mixed‐layer nitrate, zooplankton, and foraminifera (tissue and shells) was 2‰–3‰ lower in the eddy than in the background Atlantic even though the δ15N of the underlying thermocline nitrate was indistinguishable between the two settings. We suggest that the δ15N of foraminifera and other zooplankton in the eddy reflects the original Agulhas Current thermocline nitrate, which is ∼2‰ lower than that of the South Atlantic due to N2 fixation that occurs in the Indian Ocean. Foraminifera δ15N may have been lowered further during eddy migration by in situ N2 fixation and/or recycling of low‐δ15N ammonium. The absence of low‐δ15N Agulhas nitrate in the eddy thermocline can be explained by partial assimilation of the nitrate as it was mixed into the euphotic zone during and after eddy formation, raising its δ15N. The low δ15N of eddy foraminifera, apparent even after several months of eddy migration across the Cape Basin, suggests that fossil foraminifer‐bound δ15N from the region could record variations in past Agulhas leakage.