Cycad plants possess uncommon morphological, chemical, and ontogenetic characteristics and they may introduce localized changes in soil traits that increase habitat heterogeneity. We used mature Cycas micronesica K.D. Hill trees growing in a range of soil types in Guam, Rota, and Yap to quantify differences between the soils beneath target trees and paired non-target soils away from cycad trees. The chronic presence of a C. micronesica tree introduced numerous localized changes in soil traits, increasing the heterogeneity of elemental stoichiometry in the community. Nitrogen, carbon:phosphorus, and nitrogen:phosphorus were increased in target soils among every soil type. Carbon increased and phosphorus decreased in most target soils. The habitats revealing the greatest number of elements with differences between target and non-target soils were the habitats with acid soils. The greatest number of metals exhibiting differences between the target and non-target soils occurred in the impoverished sandy habitat. This is the first report that indicates a cycad tree increases community spatial heterogeneity by localized changes in soil chemistry. Contemporary declines in cycad populations due to anthropogenic threats inadvertently decrease this spatial heterogeneity and its influences on primary producers in the landscape then cascading effects on the food web.