Background and Aims. This APOA5-1131C allele is related with a higher serum triglyceride levels and perhaps a different metabolic response to a dietary intervention. The aim of the present investigation was to evaluate SNP rs662799 in the APOA5 gene and its associations with metabolic effects after a hypocaloric diet with Mediterranean pattern. Methods. A population of 363 Caucasian obese patients was enrolled. Anthropometric parameters and serum parameters (lipid profile, insulin, homeostasis model assessment (HOMA-IR), glucose, C reactive protein, adiponectin, resistin, and leptin levels) were measured, at basal time and after 3 months. All patients were genotyped in the rs662799 polymorphism. Results. The APOA5 variant distribution was as follows: 89.3% (
n
=
324
) (TT) were homozygous for the T allele, 10.5% (
n
=
38
) (TC) were heterozygous, and 0.2% (
n
=
1
) (CC) were homozygous for the C allele. Triglyceride levels were higher in patients with the C allele. After dietary intervention, BMI, weight, fat mass, waist circumference, systolic blood pressure, adiponectin, leptin, and adiponectin/leptin ratio improved significantly in both genotype groups TT and TC+CC. After dietary intervention, insulin levels (delta:
−
3.6
±
0.8
UI
/
L
vs.
−
1.5
±
0.6
UI
/
L
;
P
=
0.03
), HOMA-IR (delta:
−
1.5
±
0.4
units
vs.
−
0.3
±
0.2
units
;
P
=
0.02
), and triglyceride levels (delta:
−
19.3
±
4.2
mg
/
dL
vs.
−
3.2
±
3.1
mg
/
dL
;
P
=
0.02
) decreased in non-C allele carriers. Conclusions. C allele carriers of rs662799 of the APOA5 gene did not show an improvement in triglyceride, insulin, and HOMA-IR levels after a significant weight loss due to a hypocaloric diet with a Mediterranean pattern.