Coral reefs, and their associated diverse ecosystems, are of enormous ecological importance. In recent years, coral health has been severely impacted by environmental stressors brought on by human activity and climate change, threatening the extinction of several major reef ecosystems. Reef damage is mediated by a process called 'coral bleaching' where corals, sea anemones, and other cnidarians lose their photosynthetic algal symbionts (genus Symbiodinium) upon stress induction, resulting in drastically decreased host energy harvest and, ultimately, coral death. The mechanism by which this critical cnidarian-algal symbiosis is lost remains poorly understood. Here, we report 'Traptasia', a simple microfluidic device with multiple traps designed to isolate and image individual live larvae of Aiptasia, a sea anemone model organism, and their algal symbionts over extended time courses. Aiptasia larvae are ∼100 µm in length, deformable, and highly motile, posing particular challenges for long-term imaging. Using a trap design optimized via fluid flow simulations and polymer bead loading tests, we trapped Aiptasia larvae containing algal symbionts and demonstrated stable imaging for >10 hours. We visualized algal migration within Aiptasia larvae and observed algal expulsion under an environmental stressor. To our knowledge, this device is the first to enable live imaging of cnidarian larvae and their algal symbionts and, in further implementation, could provide important insights into the cellular mechanisms of coral bleaching under different environmental stressors. The device is simple to use, requires minimal external equipment and no specialized training to operate, and can easily be adapted to study a variety of large, motile organisms. C oral reefs are remarkably productive ecosystems, supporting approximately 9% of the ocean fish biomass and 25% of oceanic species diversity(1). Reef-building corals depend on an endosymbiotic relationship with dinoflagellate algae (genus Symbiodinium) for survival and productive growth(2, 3), as most corals and other symbiotic cnidarians derive their primary metabolic energy through algal photosynthesis(4). Under environmental and anthropogenic stressors such as rising ocean acidity, pollution, and increasing temperature, the coral-algal symbiotic relationship can break down, resulting in a process known as 'coral bleaching'(1, 5). In this process, photosynthetic algal symbionts are expelled from the coral gastrodermal tissue where they normally reside, resulting in coral discoloration and, if prolonged, host death due to insufficient energy metabolism(5). On a macro-scale, coral bleaching has been implicated as a major cause of rapid worldwide reef deterioration and ecosystem disruption(1). To address this threat, coral-algal symbiosis, in general, and the mechanism of coral bleaching, in particular, must be better understood.While candidate stressors that contribute to coral bleaching are known, the molecular and cellular mechanisms of algal expulsion remain poorly characteriz...