Intracisternal A-particle (IAP) sequences are moderately reiterated transposable elements (approximately 1,000 copies in the mouse genome) which are closely related to retroviruses and transpose via the reverse transcription of an RNA intermediate (23, 30). They possess 5Ј and 3Ј long terminal repeats (LTRs) flanking gag-pol open reading frames (30, 42) and encode particles which are intracellular and not infectious. Several classes of IAP elements have been identified, and they differ essentially by internal deletions of various lengths and/or one specific insertion (36, 51). IAPs most probably derive from an ancient retrovirus that invaded the mouse genome and has now reached a status and life cycle compatible with, and possibly beneficial to, the host, as observed in several host-parasite associations and as extensively characterized for Drosophila species (reviewed in reference 38).These elements are not inactive, as at least some of them can still transpose. Several examples of germ line and somatic IAP transpositions (in the latter case mostly within cell lines) have been reported; they were identified as a result of either the inactivation or the activation of the genes close to which they have inserted (reviewed in references 30 and 31; see also references 13, 14, and 40 and references therein). IAP transposition can be a major source of mutations and as such contribute to the induction and/or enhancement of pathological processes (13,14,30,31,40). In fact, enhanced IAP expression and particle production is a common aberration of tumor cells, both from transplanted tumors and from established cell lines, including myelomas, neuroblastomas (32), and some cell lines treated with carcinogenic agents (26,27).IAP expression in vivo has been studied primarily by Northern (RNA) blot analysis of whole tissues. During early embryogenesis, IAP transcripts can be detected in embryos from the first cleavage to blastocysts (46, 56); in adult mice, IAP transcripts can be detected at significant levels in several somatic tissues (15, 32; reviewed in reference 30), with highest expression in the cortical thymocytes (but still Ͻ5% of that in myeloma cells). This expression, however, varies among different mouse strains, and in several instances IAP proteins or particles could not be detected by using immunological approaches (32, 34) or electron microscopy (53). The biological relevance of these transcripts, therefore, can be questioned. For instance, it is not known whether they are associated with a low level of expression from the whole population of IAP sequences or whether they correspond to a more clonal expression from a limited number of elements, possibly activated by a position effect. Previous studies tend to suggest (see also Discussion) that the second hypothesis is the most plausible, since sequencing of cDNA generated from RNA of normal tissues, including the thymus, or from tumors resulted in only a limited number of IAP subtypes (35,41). This interpretation would be consistent with the requisite for gene...