Glucosylceramide synthase (GCS) catalyzes the transfer of glucose from UDP-glucose to ceramide to form glucosylceramide, the precursor of most higher order glycosphingolipids. Recently, we characterized GCS activity in highly enriched fractions from rat liver Golgi membranes (Paul, P., Kamisaka, Y., Marks, D. L., and Pagano, R. E. (1996) J. Biol. Chem. 271, 2287-2293), and human GCS was cloned by others (Ichikawa, S., Sakiyama, H., Suzuki, G., Hidari, K. I.-P. J., and Hirabayashi, Y. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 4638 -4643). However, the polypeptide responsible for GCS activity has never been identified or characterized. In this study, we made polyclonal antibodies against peptides based on the predicted amino acid sequence of human GCS and used these antibodies to characterize the GCS polypeptide in rat liver Golgi membranes. Western blotting of rat liver Golgi membranes, human cells, and recombinant rat GCS expressed in bacteria showed that GCS migrates as an ϳ38-kDa protein on SDS-polyacrylamide gels. Trypsinization and immunoprecipitation studies with Golgi membranes showed that both the C terminus and a hydrophilic loop near the N terminus of GCS are accessible from the cytosolic face of the Golgi membrane. Treatment of Golgi membranes with N-hydroxysuccinimide ester-based cross-linking reagents yielded an ϳ50-kDa polypeptide recognized by anti-GCS antibodies; however, treatment of ϳ10,000-fold purified Golgi GCS with the same reagents did not yield crosslinked GCS forms. These results suggest that GCS forms a dimer or oligomer with another protein in the Golgi membrane. The migration of solubilized Golgi GCS in glycerol gradients was also consistent with a predominantly oligomeric organization of GCS.Glucosylceramide is synthesized by UDP-glucose:ceramide glucosyltransferase (glucosylceramide synthase (GCS) 1 ) (1), a resident integral membrane protein of the cis/medial-Golgi membrane (2-4). Glucosylceramide is the common precursor of most higher order glycosphingolipids, which are important cell membrane constituents and have been implicated as important factors in development, differentiation, tumor progression, and pathogen/host interactions (5-11). Thus, GCS may play significant roles in several biological processes by regulating the overall synthesis of glucosylceramide-derived glycosphingolipids. However, surprisingly little is known about the polypeptide responsible for GCS activity.We recently solubilized and partially purified (ϳ10,000-fold) enzymatically active rat liver GCS (12). We found that detergent-solubilized GCS peaked in glycerol gradients at an apparent molecular mass of ϳ60 kDa, but were unable to conclusively identify the GCS polypeptide on SDS-polyacrylamide gels. Since then, GCS was cloned from a human cDNA library by rescue of a mutant mouse cell line deficient in GCS activity (13). The predicted amino acid sequence of the cloned enzyme encodes a protein with a calculated molecular mass of ϳ45 kDa, but the cloned enzyme was not visualized by SDS-polyacrylamide gel ele...