Supported by their high power efficiency and recent advancements in High Level Synthesis (HLS), FPGAs are quickly finding their way into HPC and cloud systems. Large amounts of work have been done so far on loop and area optimizations for different applications on FPGAs using HLS. However, a comprehensive analysis of the behavior and efficiency of the memory controller of FPGAs is missing in literature, which becomes even more crucial when the limited memory bandwidth of modern FPGAs compared to their GPU counterparts is taken into account. In this work, we will analyze the memory interface generated by Intel FPGA SDK for OpenCL with different configurations for input/output arrays, vector size, interleaving, kernel programming model, on-chip channels, operating frequency, padding, and multiple types of overlapped blocking. Our results point to multiple shortcomings in the memory controller of Intel FPGAs, especially with respect to memory access alignment, that can hinder the programmer's ability in maximizing memory performance in their design. For some of these cases, we will provide work-arounds to improve memory bandwidth efficiency; however, a general solution will require major changes in the memory controller itself.