Orthogonal modes are an effective method for aerodynamic shape optimization due to their excellent design space compactness; however, all existing methods are generated from a database of representative geometry. Moreover, application to high-fidelity design spaces is not possible because high-frequency shape components are insufficiently bounded, leading to nonsmooth and oscillatory geometries. In this work, a new generic methodology for generating orthogonal shape modes is presented based on a purely geometric derivation, eliminating the need for geometric training data. The new method is a further development of the gradient-limiting method developed previously for constraining the design space in a geometrically meaningful way to reduce the effective degrees of freedom and improve optimization convergence rate and final result. Here, the gradient-limiting methodology is reformulated by transforming the constraints directly onto design variables to produce orthogonal shape modes with equivalent constraints for ensuring smooth and valid iterates. The new generic methodology requires no training data, can be applied to arbitrary topologies using different boundary conditions, and naturally includes translational modes as part of the orthogonal basis. When applied to two standard aerodynamic test cases, the new method has superior performance compared to library-derived modes. Importantly, the optimization convergence rate is independent of the number of design variables, and the optimized objective at high design fidelities is greatly improved by avoiding local minima corresponding to spurious geometries. A nonstandard test case is demonstrated, for which traditional library modes are not useable due to nontrivial topology, and it is shown to benefit from the high-fidelity design space and translational mode made possible with the novel methodology.