In recent times, the study of the Casimir effect in quantum field theory has garnered increasing attention because of its potential to be an ideal source of exotic matter needed for stabilizing traversable wormholes. It has been confirmed through experimental evidence that this phenomenon involves fluctuations in the vacuum field, leading to a negative energy density. Motivated by the above, we have investigated Casimir wormholes with corrections from the Generalized Uncertainty Principle (GUP) within the framework of matter-coupled teleparallel gravity. Our analysis includes three well-known GUP models: the Kempf, Mangano, and Mann (KMM) model, the Detournay, Gabriel, and Spindel (DGS) model, and a third model called Model II. For a broader analysis, we have considered two well-known model functions for the teleparallel theory: a linear $$f(T,\mathcal {T})=\alpha T+\beta \mathcal {T}$$
f
(
T
,
T
)
=
α
T
+
β
T
and a quadratic model $$f(T,\mathcal {T})=\eta T^2+\chi \mathcal {T}$$
f
(
T
,
T
)
=
η
T
2
+
χ
T
. The shape function solutions corresponding to both models are examined in the absence of tidal forces in spacetime. We also demonstrate the crucial role played by the parameters of the $$f(T,\mathcal {T})$$
f
(
T
,
T
)
models in the violation of the energy conditions. With the increasing interest in detecting gravitational waves from astrophysical objects, we have thoroughly discussed the perturbation of the wormhole solutions in the scalar, electromagnetic, axial gravitational, and Dirac field backgrounds. We employ the 3rd order WKB expansion to find the complex frequencies associated with the quasinormal modes of energy dissipation. Additionally, we also calculate the active mass and total gravitational energy for the wormhole geometry. The amount of exotic matter involved in sustaining these wormholes is also found in this paper. Furthermore, the physical stability of such Casimir wormholes is examined using the Tolman–Oppenheimer–Volkoff equation.