The surface waters of the Southwest Pacific have some of the lowest CO 2 partial pressures presently recorded, indicating that it is a globally important sink for carbon (Currie and Hunter, 1998). Much of this sequestering activity lies within the Subtropical Frontal Zone (SFZ) east of New Zealand where cool, more saline, macro-nutrient rich Subantarctic (SA) waters meet warmer, less saline, nutrient poor Subtropical (ST) waters over the Chatham Rise, enhancing production at the Subtropical convergence (Bradford-Grieve et al. 1999; Bathmann et al. 2000; Murphy et al., 2001). Vertical export of particulates from the SFZ epipelagic is thereby enhanced relative to the surrounding oligotrophic ocean, drawing down carbon and sustaining a rich and diverse benthic fauna on the flanks of the Rise (Nodder and Northcote 2001). The efficiency of biological carbon sequestration at the SFZ will depend on the zone's ecological structure and function, specifically, the relative amounts of upper ocean carbon recycled and retained in the epipelagic by the microbial loop (Pomeroy, 1974; Azam et al., 1983) versus that which enters larger components, such as sinking aggregates or large algae (typically diatoms), or mesozooplankton (>200 µm), which produce sinking faeces (Legendre and Rassoulzadegan, 1995; Boyd and Newton, 1995). While a simple view is that microbially dominated food webs enhance the retention of materials in the epipelagic and mesozooplankton activities enhance export by algal grazing and production of sinking faeces, the true picture is probably more complex (Wassmann, 1998; Kiørboe, 1998). If the copepod mesozooplankton are strongly omnivorous (taking both micro-autotrophic and heterotrophic prey), more ungrazed phytoplankton cells and aggregates would be exported directly, as algal stocks are released from grazing. Copepod omnivory would also suppress 'retentive' microbial food webs, and enable copepods to use small picoplankton consumed by their heterotrophic prey and convert it to exportable faecal production. Finally, if the copepods are themselves