In this study, we explored the green synthesis of metal nanoparticles (Ag-NPs, Au-NPs, and Pd-NPs) using Moringa oleifera seed (MOS) extract, which is known for its nutrient density, antioxidant properties, anti-inflammatory effects, and potential benefits in managing cholesterol, blood sugar levels, as well as promoting digestion, skin, and hair health. The nanoparticles’ size was controlled by varying the concentration of MOS extract. The successful formation of Au-NPs and Ag-NPs was confirmed through surface plasmon resonance (SPR), while the absence of absorption at 420 nm indicated the reduction of Pd2+ ions to Pd0, affirming the synthesis of Pd-NPs. The nanoparticles exhibited mono-dispersed, spherical shapes with confirmed crystallinity. Sizes were determined as 28 nm for Pd-NPs, 5 nm for Au-NPs, and 19 nm for Ag-NPs. The MOS extract’s phenols and proteins played a crucial role in reducing and stabilising Ag-NPs, Au-NPs, and Pd-NPs. Notably, the synthesised nanoparticles demonstrated strong antimicrobial activity, particularly against Salmonella typhi, making them potential antibacterial agents. The catalytic efficiency of Au-NPs, Ag-NPs and Pd-NPs was studied using the reduction of 4-Nitrophenol (4-NP) by NaBH4 to 4-Aminophenol. Additionally, Au-NPs showed enhanced photocatalytic degradation rate constant and catalytic reaction rate constant of 0.0038/min and 0.261/min respectively, due to their small size and increased surface area. By combining a green synthesis approach with an in-depth analysis of properties and diverse applications, this study provides valuable insights into the immense potential of MOS-assisted metal nanoparticles for various technological and environmental advancements.