Grid computing and scientific research: Concepts and review

Jaber, Alaa Shawqi; Othman, Marini; Sjaugi, Muhammad Farhan

doi:10.1109/icriis.2013.6716701

Cited by 2 publications

(2 citation statements)

References 16 publications

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“…This particular approach is an interesting option to proceed for investigating the molecular mechanism of TNBC further in the future. Thus, it should be supported with the sufficient in-house GRID-based computational resources, as relying on the external web-based application is possibly insufficient due to the certain computational limitation (Heru Suhartanto, 2012;van Schaik et al, 2012;Jaber et al, 2013).…”

Section: Discussionmentioning

confidence: 99%

The Construction of Two and Three Dimensional Molecular Models for the miR-31 and Its Silencer as the Triple Negative Breast Cancer Biomarkers

Parikesit¹

2018

OnLine Journal of Biological Sciences

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The Triple Negative Breast Cancer (TNBC) is considered as the most difficult Breast Cancer type to be medicated. So far, the acceptable medication and diagnostics measure are based upon the proteomics-world view, especially with utilizing the natural products and their derivatives as drug candidates. However, as the transcriptomicsstudies are getting more advanced, the research on non-coding (nc)RNA is being considered as a more feasible approach to deal with the TNBC. The miR-31, as the ncRNA that play part in the molecular mechanism of the TNBC, is extensively studied mainly for providing the biomarker and drug candidate. However, the molecular interaction and structures are mainly unknown and it is subject of investigation of this research. This research is utilizing the interplay of pipelines that consist of the Vienna RNA package for 2D RNA structure prediction and the simRNA/modeRNA packages for 3D RNA structure prediction. The result is a blueprint that satifactionary illustrates the RNA structure in a fine-grained manner. The miR-31 and its respective silencing (si)RNA are indeed could be useful to be biomarkers and blueprint for the drug design of the TNBC.

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Section: Discussionmentioning

confidence: 99%

The Construction of Two and Three Dimensional Molecular Models for the miR-31 and Its Silencer as the Triple Negative Breast Cancer Biomarkers

Parikesit¹

2018

OnLine Journal of Biological Sciences

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“…However, the centralised, far away cloud server location is causing a too-long latency to respond to the requests from a vast number of IoT sensors distributed in a large working area, especially for applications with latency-critical needs, such as e-health and the Internet of Vehicles (IoV). This type of central data processing also causes colossal network traffic as the number of services and objects increases [2][3][4][5].…”

Section: Introductionmentioning

confidence: 99%

A survey on edge and fog nodes' placement methods, techniques, parameters, and constraints

Al‐Asadi,

Al‐Mamory

2023

IET Networks

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Within Edge and Fog computing, edge and fog nodes must be optimally located at the network edge to minimise the network's overall latency. This survey addresses all aspects of these nodes' placement problems. Literature on edge and fog nodes' placement is collected from reputable databases (IEEE Xplore digital library, Scopus, ScienceDirect, and Web of Science) using a search query. Manual search using keywords and the snowball method is also used to get as many related papers as possible. According to defined inclusion criteria, retrieved documents are filtered to 64 articles for eight years (2015–2022). Depending on the optimisation method used, literature is classified into six categories. The first relies on Integer programming, accounting for 20.3% (13/64). The second category depends on heuristic and metaheuristic methods, accounting for 20.3% (13/64). The third category depends on hybrid methods between the two aforementioned categories accounting for 18.7% (12/64). Forth category depends on clustering methods, accounting for 11% (7/64). The fifth category depends on reinforcement learning, accounting for 6.3% (4/64). And the final category depends on the hybrid methods between two or more methods mentioned above, accounting for 23.4% (15/64). Papers have been analysed to get information like the optimisation problem, the method used for solving it, considered parameters, objectives, constraints, implementation tools, and evaluation methods.

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Grid computing and scientific research: Concepts and review

Cited by 2 publications

References 16 publications

The Construction of Two and Three Dimensional Molecular Models for the miR-31 and Its Silencer as the Triple Negative Breast Cancer Biomarkers

The Construction of Two and Three Dimensional Molecular Models for the miR-31 and Its Silencer as the Triple Negative Breast Cancer Biomarkers

A survey on edge and fog nodes' placement methods, techniques, parameters, and constraints

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