River deltas are of high socioeconomic value, since they are often densely populated areas with high agricultural productivity (Neumann et al., 2015; Seto, 2011). The combination of growing population, increasingly intensive agriculture, and, in some areas, increased likelihood of droughts is expected to lead to fresh water shortages in surface water systems (Bucx et al., 2010). These stresses in turn will instigate more groundwater pumping, which leads to sea water intrusion and the upconing of saline groundwater (Michael et al., 2017; Werner et al., 2013). Despite that salinization poses a big problem to many large deltas (Rahman et al., 2019), the volume of fresh groundwater resources in many deltas is unknown, especially in the deeper parts of the groundwater system. While advances have been made in monitoring, especially with the onset of large-scale airborne electromagnetic (AEM) studies (King et al., 2018), 3D variable-density groundwater modeling still remains the only method to estimate a complete 3D fresh-salt groundwater distribution for large-scale groundwater systems (Faneca Sànchez et al., 2012). These models also have the added benefit