Nontyphoidal disease contributes toward significant morbidity and mortality across the world. Host factors, including gamma interferon, tumor necrosis factor alpha, and gut microbiota, significantly influence the outcome of pathogenesis. However, the entire repertoire of host protective mechanisms contributing to pathogenicity is not completely appreciated. Here, we investigated the roles of receptor guanylyl cyclase C (GC-C), which is predominantly expressed in the intestine and regulates intestinal cell proliferation and fluid-ion homeostasis. Mice deficient in GC-C () displayed accelerated mortality compared with that for wild-type mice following infection via the oral route, even though both groups possessed comparable systemic infection burdens. Survival following intraperitoneal infection remained similar in both groups, indicating that GC-C offered protection via a gut-mediated response. The serum cortisol level was higher in mice than wild-type () mice, and an increase in infection-induced thymic atrophy with a loss of immature CD4 CD8 double-positive thymocytes was observed. Accelerated and enhanced damage in the ileum, including submucosal edema, epithelial cell damage, focal tufting, and distortion of the villus architecture, was seen in mice concomitantly with a larger number of ileal tissue-associated bacteria. Transcription of key mediators of-induced inflammation (interleukin-22/Reg3β) was altered in mice in comparison to that in mice. A reduction in fecal lactobacilli, which are protective against infection, was observed in mice. mice cohoused with wild-type mice continued to show reduced amounts of lactobacilli and increased susceptibility to infection. Our study, therefore, suggests that the receptor GC-C confers a survival advantage during gut-mediated serovar Typhimurium pathogenesis, presumably by regulating effector mechanisms and maintaining a beneficial microbiome.