Nucleotide sequences were determined for the complete S genome segments of the six distinct hantavirus genotypes from Argentina and for two cell culture-isolated Andes virus strains from Chile. Phylogenetic analysis indicates that, although divergent from each other, all Argentinian hantavirus genotypes group together and form a novel phylogenetic clade with the Andes virus. The previously characterized South American hantaviruses Laguna Negra virus and Rio Mamore virus make up another clade that originates from the same ancestral node as the Argentinian/Chilean viruses. Within the clade of Argentinian/Chilean viruses, three subclades can be defined, although the branching order is somewhat obscure. These are made of (i) "Lechiguanas-like" virus genotypes, (ii) Maciel virus and Pergamino virus genotypes, and (iii) strains of the Andes virus. Two hantavirus genotypes from Brazil, Araraquara and Castello dos Sonhos, were found to group with Maciel virus and Andes virus, respectively. The nucleocapsid protein amino acid sequence variability among the members of the Argentinian/Chilean clade does not exceed 5.8%. It is especially low (3.5%) among oryzomyine species-associated virus genotypes, suggesting recent divergence from the common ancestor. Interestingly, the Maciel and Pergamino viruses fit well with the rest of the clade although their hosts are akodontine rodents. Taken together, these data suggest that under conditions in which potential hosts display a high level of genetic diversity and are sympatric, host switching may play a prominent role in establishing hantavirus genetic diversity. However, cospeciation still remains the dominant factor in the evolution of hantaviruses.Hantaviruses, members of the Bunyaviridae family, are enveloped, single-stranded, negative-sense RNA viruses (10). The virus genome consists of three segments, designated large (L), medium (M), and small (S), that are packed into helical nucleocapsids. These segments encode the RNA polymerase (20, 42), a glycoprotein precursor that is cotranslationally processed to yield two envelope glycoproteins (G1 and G2) and a nucleocapsid (N) protein, respectively (38, 42).Each hantavirus is typically predominantly associated with a specific rodent host indigenous to the geographic area from which the hantavirus was characterized (15,21,30,32,33), although there appear to be occasional occurrences of spillover infections in related rodent species (3,5,15,27,28,41). According to most studies, the rodent host appears to be an asymptomatic carrier with a persistent lifetime infection (21, 51). However, recent data indicate that North American SinNombre-like viruses cause some pathology within their reservoir hosts (25, 31). The genus Hantavirus includes approximately 30 distinct virus serotypes/genotypes (20, 38, 39). As only a small percentage of known rodent species has been examined for the presence of hantavirus genetic material, this number is likely to increase. In North America, hantaviruses are the cause of hantavirus pulmonary syndrome (HP...