Haplotype diversity of 17 Y-STRs in Sheikh population of Punjab

Aslam, Muhammad Adeel; Hussain, Manzoor; Khan, Khushbukhat; Zahra, Fatima Tuz; Shafique, Muhammad; Javeed, Shahzadi

doi:10.1007/s00414-019-02202-1

Cited by 3 publications

(2 citation statements)

References 11 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…People from particular geographical regions shared a common haplotype; in other words, people from different regions of Iran have been separated from each other only by geographical boundaries, while they are genetically similar. Moreover, the haplotype diversity values from neighboring populations were 0.9850 in Afghanistan [ 32 ], 0.9992 in Turkish Cypriots [ 30 ], 0.99885 in the United Arab Emirates [ 33 ], 0.9986 in Eastern Turkey [ 29 ], 0.999677 in the Sindhi population of Pakistan [ 34 ], 0.9305 in Punjab Pakistan [ 35 ], 0.892 in Iraq [ 36 ], 0.9932 in Tunis [ 37 ], 0.9963 in Germany [ 38 ], 0.9941 in Italy [ 38 ], 0.9968 in China [ 38 ], 0.996 in India [ 38 ], and 1.0 in Qatar [ 39 ]. As expected, maximum haplotype diversity was observed, given the ethnic diversity of Iran’s population.…”

Section: Discussionmentioning

confidence: 99%

“…Comparing the DC value in the Iranian population with that of the neighboring populations, i.e. Afghanistan (DC = 0.6277) [ 32 ], Turkish Cypriots (DC = 0.9051 ), Eastern Turkey (DC = 0.9343) [ 29 ], United Arab Emirates (DC = 0.9003) [ 33 ], Punjab Pakistan (DC = 0.6438) [ 35 ], Tunis (DC = 0.7714) [ 37 ], and India (DC = 0.8497) [ 40 ], demonstrated that the Iranian population consisted of a relatively large number of unique haplotypes; however, these markers may not discriminate in a proper way in the neighboring populations.…”

Section: Discussionmentioning

confidence: 99%

See 1 more Smart Citation

Haplotype diversity of 17 Y-STR in the Iranian population

Eskandarion,

Tabrizi,

Shirkoohi

et al. 2024

BMC Genomics

View full text Add to dashboard Cite

The current study aimed to evaluate Y chromosome haplotypes obtained from 1353 unrelated Iranian males using the AmpFlSTRTM YfilerTM kit; 1353 out of the 1353 identified haplotypes were unique. The haplotype diversity (HD) and discriminating capacity (DC) values were 1.00000 and 0.997, respectively. Analysis of genetic distance was performed using molecular variance (AMOVA) and multidimensional scaling plots (MDS), revealing a statistically significant difference between the study population and previous data reported for other Iranian populations and other neighboring countries. The present findings are likely to be useful for forensic casework analyses and kinship investigations.

show abstract

Section: Discussionmentioning

confidence: 99%

Section: Discussionmentioning

confidence: 99%

Haplotype diversity of 17 Y-STR in the Iranian population

Eskandarion,

Tabrizi,

Shirkoohi

et al. 2024

BMC Genomics

View full text Add to dashboard Cite

show abstract

Croatian Genetic Heritage: Renewed Y Chromosome Story Two Decades Later

Primorac

Škaro

Projić

et al. 2022

Preprint

View full text Add to dashboard Cite

Aim: To analyze additional set of Y-Chromosome genetic markers to acquire a more detailed insight into the diversity of the Croatian population. Methods: A total number of 518 Yfiler Plus profiles was genotyped. Allele, haplotype frequencies and haplotype diversity, were calculated using the STRAF software package v2.0.4. Genetic distances were quantified by Rst using AMOVA online tool from the YHRD. The evolutionary history was inferred using the neighbor-joining method of phylogenetic tree construction in MEGAX software. Whit Athey's Haplogroup Predictor v5 was used for additional comparison with selected European populations. Results: The total of 507 haplotypes were used for genetic STR analysis. The interpopulation comparison with the original 27 Y-STR markers shows the lowest genetic diversity between Croatian and Serbian population, and the highest between Croatian and Spanish population. Interpopulation study on 17 Y-STR markers shows the lowest genetic diversity between Croatian and Bosnian-Herzegovinian population, and the highest between Croatian and Irish population. Total of 518 haplotypes were used in the determination of haplogroup diversity. Haplogroup I with its sublineage I2a expressed the highest prevalence. Haplogroup R, with its major sublineage R1a, is the second most abundant in the studied Croatian population, except for the subpopulation of Hvar, where E1b1b is the second most abundant haplogroup. Rare haplogroups also confirmed in this study are L, T and Q. G1 is detected for the very first time in Croatian population. Conclusion: New insight into differences between examined subpopulations of Croatia and their possible (dis)similarities with neighboring abroad populations was notified.

show abstract

Haplotype diversity of 17 Y-STR in the Iranian population

Eskandarion

Tabrizi

Shirkoohi

et al. 2023

Preprint

View full text Add to dashboard Cite

In this study, we reported for the first time Y chromosome haplotypes throughout Iran from 1097 unrelated Iranian males using the AmpFlSTRTM YfilerTM kit. 1094 out of the 1097 haplotypes identified were unique. The values of haplotype diversity (HD) and discriminating capacity (DC) were 1.00000 and 0.997, respectively. An analysis of genetic distance was performed by the molecular variance (AMOVA) and multidimensional scaling plots (MDS), showing that a statistically was observed significant difference between the study population and previous data reported for other Iranian populations and other neighboring countries. The findings of the present study are likely to be useful for Forensic casework analysis and kinship investigations.

show abstract

Haplotype diversity of 17 Y-STRs in Sheikh population of Punjab

Cited by 3 publications

References 11 publications

Haplotype diversity of 17 Y-STR in the Iranian population

Haplotype diversity of 17 Y-STR in the Iranian population

Croatian Genetic Heritage: Renewed Y Chromosome Story Two Decades Later

Haplotype diversity of 17 Y-STR in the Iranian population

Contact Info

Product

Resources

About