Harbor porpoise losing its edge: Genetic time series suggests a rapid population decline in Iberian waters over the last 30 years

Ben Chehida, Yacine; Stelwagen, Tjibbe; Hoekendijk, Jeroen P. A.; Ferreira, Marisa; Eira, Catarina; Torres‐Pereira, Andreia; Nicolau, Lidia; Thumloup, Julie; Fontaine, Michael C.

doi:10.1002/ece3.10819

Cited by 4 publications

(1 citation statement)

References 89 publications

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“…During the study, it became apparent that the determinism of the recruitment step is not fully understood and that the recruitment process may even be more stochastic than deterministic. It would be desirable to improve the metapopulation boundary definition with population genetics information (e.g., [65,66]).…”

Section: Implications Of the Modellingmentioning

confidence: 99%

Modelling the Dynamics of Outbreak Species: The Case of Ditrupa arietina (O.F. Müller), Gulf of Lions, NW Mediterranean Sea

Coston-Guarini,

Charles,

Guarini

2024

JMSE

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An outbreak species exhibits extreme, rapid population fluctuations that can be qualified as discrete events within a continuous dynamic. When outbreaks occur they may appear novel and disconcerting because the limiting factors of their dynamics are not readily identifiable. We present the first population hybrid dynamic model that combines continuous and discrete processes, designed to simulate marine species outbreaks. The deterministic framework was tested using the case of an unexploited benthic invertebrate species: the small, serpulid polychaete Ditrupa arietina. This species is distributed throughout the northeast Atlantic Ocean and Mediterranean Sea; it has a life cycle characterised by a pelagic dispersive larval stage, while juveniles and adults are sedentary. Sporadic reports of extremely high, variable densities (from <10 to >10,000 ind.m−2) have attracted attention from marine ecologists for a century. However, except for one decade-long field study from the Bay of Banyuls (France, Gulf of Lions, Mediterranean Sea), observations are sparse. Minimal formulations quantified the processes governing the population dynamics. Local population continuous dynamics were simulated from a size-structured model with a null immigration–emigration flux balance. The mathematical properties, based on the derived hybrid model, demonstrated the possibilities of reaching an equilibrium for the population using a single number of recruits per reproducer. Two extrapolations were made: (1) local population dynamics were simulated over 180 years using North Atlantic Oscillation indices to force recruitment variability and (2) steady-state population densities over the Gulf of Lions were calculated from a connectivity matrix in a metapopulation. The dynamics reach a macroscopic stability in both extrapolations, despite the absence of density regulating mechanisms. This ensures the persistence of D. arietina, even when strong, irregular oscillations characteristic of an outbreak species are observed. The hybrid model suggests that a macroscopic equilibrium for a population with variable recruitment conditions can only be characterised for time periods which contain several outbreak occurrences distributed over a regional scale.

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Section: Implications Of the Modellingmentioning

confidence: 99%

Modelling the Dynamics of Outbreak Species: The Case of Ditrupa arietina (O.F. Müller), Gulf of Lions, NW Mediterranean Sea

Coston-Guarini,

Charles,

Guarini

2024

JMSE

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Harbour porpoise (Phocoena phocoena) in the Wadden Sea World Heritage Site and requirements for trilateral monitoring

Scheidat,

Vrooman,

Teilmann

et al. 2024

Mar. Biodivers.

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The harbour porpoise (Phocoena phocoena) is considered part of the ‘Outstanding Universal Value’ characterising the Wadden Sea World Heritage Site (WS WHS). The Trilateral Wadden Sea Plan aims to preserve the conservation status of the Trilateral Wadden Sea Cooperation Area, encompassing the WS WHS. The plan has specified two conservation targets for the harbour porpoise: (1) viable stocks and a natural reproduction capacity and (2) conservation of habitat quality for its conservation. To assess the current occurrence of the harbour porpoise in the Wadden Sea area, we collated and analysed data from regional and national research projects using telemetry, aerial surveys, strandings and passive acoustic monitoring, obtained over the years 1990–2020. The results illustrate that porpoises occur in both offshore and intertidal waters, showing seasonal movements and changes in local occurrence over time. Some porpoises displayed limited home ranges throughout the year, suggesting a possible residency for some of the animals using the Wadden Sea area. We also showed that methods, frequency and spatial coverage of monitoring activities vary among the countries Denmark, Germany and the Netherlands. We discuss the suitability of the different methods both regarding the challenges of monitoring in the complex Wadden Sea habitat as well as their ability to target the conservation aims of the WHS. We give several recommendations to assess the status of the species to meet the identified conservation aims.

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Mitochondrial Variation in Anopheles gambiae and Anopheles coluzzii: Phylogeographic Legacy and Mitonuclear Associations With Metabolic Resistance to Pathogens and Insecticides

Amaya Romero,

Chenal,

Ben Chehida

et al. 2024

Genome Biology and Evolution

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Mitochondrial DNA has been a popular marker in phylogeography, phylogeny, and molecular ecology, but its complex evolution is increasingly recognized. Here, we investigated mitochondrial DNA variation in Anopheles gambiae and Anopheles coluzzii, in relation to other species in the Anopheles gambiae complex, by assembling the mitogenomes of 1,219 mosquitoes across Africa. The mitochondrial DNA phylogeny of the Anopheles gambiae complex was consistent with previously reported highly reticulated evolutionary history, revealing important discordances with the species tree. The three most widespread species (An. gambiae, An. coluzzii, and Anopheles arabiensis), known for extensive historical introgression, could not be discriminated based on mitogenomes. Furthermore, a monophyletic clustering of the three saltwater-tolerant species (Anopheles merus, Anopheles melas, and Anopheles bwambae) in the Anopheles gambiae complex also suggested that introgression and possibly selection shaped mitochondrial DNA evolution. Mitochondrial DNA variation in An. gambiae and An. coluzzii across Africa revealed significant partitioning among populations and species. A peculiar mitochondrial DNA lineage found predominantly in An. coluzzii and in the hybrid taxon of the African “far-west” exhibited divergence comparable to the interspecies divergence in the Anopheles gambiae complex, with a geographic distribution matching closely An. coluzzii's geographic range. This phylogeographic relict of the An. coluzzii and An. gambiae split was associated with population and species structure, but not with the rare Wolbachia occurrence. The lineage was significantly associated with single nucleotide polymorphisms in the nuclear genome, particularly in genes associated with pathogen and insecticide resistance. These findings underline potential mitonuclear coevolution history and the role played by mitochondria in shaping metabolic responses to pathogens and insecticides in Anopheles.

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Harbor porpoise losing its edge: Genetic time series suggests a rapid population decline in Iberian waters over the last 30 years

Cited by 4 publications

References 89 publications

Modelling the Dynamics of Outbreak Species: The Case of Ditrupa arietina (O.F. Müller), Gulf of Lions, NW Mediterranean Sea

Modelling the Dynamics of Outbreak Species: The Case of Ditrupa arietina (O.F. Müller), Gulf of Lions, NW Mediterranean Sea

Harbour porpoise (Phocoena phocoena) in the Wadden Sea World Heritage Site and requirements for trilateral monitoring

Mitochondrial Variation in Anopheles gambiae and Anopheles coluzzii: Phylogeographic Legacy and Mitonuclear Associations With Metabolic Resistance to Pathogens and Insecticides

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