Harlequin syndrome is caused by autonomic dysfunction, affecting sweating and flushing of the face and less commonly, the upper limb and upper chest. It results from compromise of vasomotor and pseudomotor sympathetic nerve supply to one side of face with over-reaction, presumably compensatory, of the corresponding fibres on the intact side. This syndrome is a rare phenomenon, and is even rare following thyroidectomy, but is a worrying symptom for both the patient and the surgeon. Till now only a single case of Harlequin syndrome has been reported following thyroidectomy, we hereby present the second case of Harlequin syndrome following thyroidectomy, in a 40 year old female.