Histone
deacetylases (HDACs) are an attractive therapeutic target
for a variety of human diseases. Currently, all four FDA-approved
HDAC-targeting drugs are nonselective, pan-HDAC inhibitors, exhibiting
adverse side effects at therapeutic doses. Although selective HDAC
inhibition has been proposed to mitigate toxicity, the targeted catalytic
domains are highly conserved. Herein, we describe a series of rationally
designed, conformationally constrained, benzanilide foldamers which
selectively bind the catalytic tunnel of HDAC8. The series includes
benzanilides, MMH371, MMH409, and MMH410, which exhibit potent in vitro HDAC8
activity (IC50 = 66, 23, and 66 nM, respectively) and up
to 410-fold selectivity for HDAC8 over the next targeted HDAC. Experimental
and computational analyses of the benzanilide structure docked with
human HDAC8 enzyme showed the adoption of a low-energy L-shaped conformer
that favors HDAC8 selectivity. The conformationally constrained HDAC8
inhibitors present an alternative biological probe for further determining
the clinical utility and safety of pharmacological knockdown of HDAC8
in diseased cells.