Medaka (Oryzias latipes) is a teleost fish with an XX/XY sex determination system, similar to that of mammals. However, under high temperature conditions, XX medaka is masculinised by elevation of cortisol, the major teleost glucocorticoid. in this study, to identify novel factors in the gonads acting downstream from cortisol during sexual differentiation, we performed RNA sequencing (RNA-seq) analysis using the gonadal regions of larvae reared at normal temperature with and without cortisol, and at high temperature. The RNA-seq and real-time PCR analyses showed that expression of some peroxisome proliferator-activated receptor α (PPARα) signalling-targeted genes was increased by cortisol. PPARα agonist treatment induced masculinisation of XX medaka in some cases, and co-treatment of the agonist with cortisol further induced masculinisation, whereas treatment of pparaa knockout medaka with cortisol or the agonist did not induce masculinisation. this study provides the first evidence that PPARα is involved in environmental sex determination in vertebrates. Many vertebrates have males and females that reproduce sexually. Sex is genotypically determined in many species, but sex determination is greatly affected by ambient temperature in poikilothermic vertebrates, including reptiles, amphibians, and fish 1. Furthermore, environmental factors, such as pH 2 , density 3 , and social factors 4 , are suggested to override genetic sex determination in some teleost fish. However, the molecular mechanisms of environmental sex determination in these species remain poorly understood. Medaka (Oryzias latipes) is a small teleost fish that offers many advantages, including the availability of many useful strains 5. Transgenic (Tg) techniques and the gene knockout systems using clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9), are established 6-8. Moreover, the sex-determining gene dmy (also known as dmrt1bY) on the Y chromosome has been identified in this fish 9. Therefore, medaka is a useful animal model for vertebrate genetic analysis of the sex determination and differentiation. The first appearance of morphological sex differentiation in medaka is the difference in the number of germ cells before hatching, as germ cells in genetic females (XX) undergo a rapid proliferation and subsequently initiate oogenesis while they remain quiescent in genetic males (XY) 10,11. High temperature (HT) treatment during the sex differentiation inhibits germ cell proliferation and oocyte development in XX medaka, and causes masculinisation 12-14. HT also causes masculinisation through elevating the levels of cortisol, the major teleost glucocorticoid 15. Furthermore, exposure of XX medaka to cortisol or HT increases expression of gonadal soma-derived growth factor (gsdf) and decreases expression of cytochrome P450 family 19 subfamily A member 1a (cyp19a1a) by 5 days post-hatching (dph) 16. However, it remains unclear how HT-elevated cortisol induces the masculinisation of XX medaka. Cortisol...