As greenhouse horticulture continues to increase in South Korea, the effects of metal(loid)s from wastewater discharges on stream sediments were analyzed. A total of 106 samples were analyzed for cadmium (Cd), boron (B), copper (Cu), nickel (Ni), lead (Pb), zinc (Zn), chromium (Cr), manganese (Mn), and iron (Fe). The coefficient of variation (CV) of the metal(loid)s components was 96.58% for Mn, 93.40 for Zn, 62.47 for B, 58.90 for Pb, and 58.14 for Cd, suggesting anthropogenic sources. Correlation analysis suggested a cumulative source for Cd-Zn and B, and cluster analysis suggested an anthropogenic source for Cu, Pb, B, and Mn. The contamination factor (CF) suggested the need to trace the source of contamination to Pb (3.21 ± 1.89) and B (1.33 ± 0.83) and EF to Pb (3.30 ± 1.81) and B (1.44 ± 0.94). The analytical results identify anthropogenic sources of Pb, B, and Cd. The high contamination of Cd suggests the influence of mining areas, and Pb suggests the influence of traffic, fertilizers, pesticides, and fossil fuels in greenhouses, in addition to the influence of mines. B confirmed the impact of the facility’s vegetable wastewater and suggested the need to further examine the cumulative impact of Mn, Fe, etc. By utilizing the facility horticulture wastewater for ecological restoration and other agricultural uses, we aim to prevent stream sediment pollution and realize a sustainable agricultural environment.