Understanding the laws behind the development of water-conducting fissure zones in the Huanglong Jurassic coalfield and accurately predicting the height of these water-conducting fissures are crucial to prevent and control the water damage in the overlying thick sandstone aquifer of the Luohe Formation. To develop a prediction model applicable to mining in the Huanglong Jurassic coalfield, data from measurements of 27 water-conducting fissure zones in the coalfield were used as samples, and coal seam burial depth, coal seam mining thickness and the oblique length of the working face were used as training indicators. The whale optimisation algorithm (WOA), back-propagation neural network (BPNN) and AdaBoost algorithm were combined to develop the AdaBoost–WOA–BPNN model for predicting the height of water-conducting fissure zones. The accuracies of the BPNN, WOA–BPNN and AdaBoost–WOA–BPNN models were compared, and the height of the water-conducting fissure zone in the 4105 working face of Wenjiapo coal mine was predicted. The AdaBoost–WOA–BPNN model outperformed the other models in terms of error, prediction accuracy and applicability. Compared with the traditional BPNN model, the WOA–BPNN model improved accuracy by 2.4%, while the AdaBoost–WOA–BPNN model improved accuracy by 3.64%. The measured heights of the water-conducting fissure zone in the 4105 working face were 168.2 m (SD1 hole) and 222.3 m (SD2 hole). The corresponding predicted heights by the AdaBoost–WOA–BPNN model were 162.75 m and 213.48 m, respectively. The absolute errors between the predicted and measured values from holes SD1 and SD2 were respectively 5.45 m and 8.82 m, with relative errors of 3.17% and 4.05%. The prediction accuracy meets the requirements of engineering practice. The results of this study provide a valuable reference for predicting the height of the water-conducting fissure zone and for the prevention and control of roof water hazards in the Huanglong Jurassic coalfield.