Cell membranes are comprised of multicomponent lipid and protein mixtures that exhibit a complex partitioning behavior. Regions of structural and compositional heterogeneity play a major role in the sorting and self-assembly of proteins, and their clustering into higher-order oligomers. Here, we use computer simulations and optical microscopy to study the sorting of transmembrane helices into the liquid-disordered domains of phase-separated model membranes, irrespective of peptide-lipid hydrophobic mismatch. Free energy calculations show that the enthalpic contribution due to the packing of the lipids drives the lateral sorting of the helices. Hydrophobic mismatch regulates the clustering into either small dynamic or large static aggregates. These results reveal important molecular driving forces for the lateral organization and self-assembly of transmembrane helices in heterogeneous model membranes, with implications for the formation of functional protein complexes in real cells.fluorescence microscopy | lipid rafts | membrane proteins | molecular dynamics | linactants T he heterogeneity of biological membranes plays an important role in cellular function (1, 2). Despite experimental progress in recent years (3), the characterization of lateral organization in biological membranes, however, remains challenging due to the lack of tools to study fluctuating nanoscale assemblies in living cells (4-6). Model membranes (7-10) as well as isolated plasma membranes (11, 12) are more frequently studied, because largescale phase separation can be observed in these systems. In particular, at cholesterol concentrations reminiscent of biological membranes (10-30 mol % cholesterol), ternary mixtures of saturated and unsaturated lipids can segregate into coexisting lipid domains of different fluidity, a liquid-ordered (Lo) and a liquiddisordered (Ld) phase. Probing the structural and dynamical properties of these fluid domains has received a lot of attention, as it is presumably linked to the formation of lipid nanodomains ("rafts") in real cells (13,14).The structure and function of membrane proteins is intimately connected with their lipid environment (15, 16). Because of the heterogeneity of the cell membrane, proteins partition between different lipid domains, are recruited to specific locations, and form functional complexes (17)(18)(19). This lateral organization is very important for various cellular processes, such as membrane fusion (20, 21), protein trafficking (22), and signal transduction (23-25). Although lipids and integral membrane proteins are well studied by themselves, the molecular properties that determine the specific interactions between them remain poorly understood. Interactions important for protein sorting and self-assembly are (specific) protein-protein and protein-lipid forces, and indirect lipid-mediated forces. The latter category includes, for instance, forces due to entropic confinement of lipid chains and forces arising from the mismatch between the hydrophobic parts of the protein and the bi...