Oxygen-sensitive accumulation and degradation, two opposite but intrinsically linked events, of heme proteins in mitochondria affect mitochondrial functions, including bioenergetics and oxygen-sensing processes. Cystathionine β-synthase (CBS) contains a prosthetic heme group and catalyzes the production of hydrogen sulfide in mammalian cells. Here we show that CBS proteins were present in liver mitochondria at a low level under normoxia conditions. Ischemia/hypoxia increased the accumulation of CBS proteins in mitochondria. The normalization of oxygen partial pressure accelerated the degradation of CBS proteins. Lon protease, a major degradation enzyme in mitochondrial matrix, recognized and degraded mitochondrial CBS by specifically targeting at the oxygenated heme group of CBS proteins. The accumulation of CBS in mitochondria increased hydrogen sulfide production, which prevented Ca 2+ -mediated cytochrome c release from mitochondria and decreased reactive oxygen species generation. Mitochondrial accumulation of heme oxygenase-1, another heme protein, was also regulated by oxygen level and Lon protease in the same mechanism as for CBS. Our findings provide a fundamental and general mechanism for oxygen-sensitive regulation of mitochondrial functions by linking oxygenation level to the accumulation/ degradation of mitochondrial heme proteins.gasotransmitter | hepatocytes | mitochondrial swelling | signaling | transfection M itochondrial protein quality control system maintains homeostasis of mitochondria via regulated mitochondrial biogenesis and protein degradation (1, 2). Lon protease is a major protease in mitochondrial matrix in mammalian cells, being engaged in the degradation of proteins to prevent protein aggregation (2, 3). In doing so, Lon protease regulates many oxygen/ATP-dependent mitochondrial processes under physiological and pathophysiological conditions, such as DNA binding, chaperone activity, the assembly of respiratory complexes, and cellular aging and degeneration.Mitochondrial heme-containing proteins are indispensable for normal mitochondrial function such as oxidative phosphorylation and biogenesis. The mechanisms by which Lon protease recognizes and regulates the degradation of mitochondrial heme proteins are unknown to date. Cystathionine β-synthase (CBS) is a nuclear encoding heme protein, playing a key role in homocysteine and cysteine metabolism and endogenous H 2 S production (4-6). Deficiency of CBS as seen in autosomal recessively genetic disease causes homocystinuria, leading to dislocated optic lenses, skeletal disorders, mental retardation, and vascular disorders (4-6). As a gasotransmitter, H 2 S regulates a wide variety of physiological events from vasorelaxation to glucose metabolism (4,7,8). We hypothesize that the presence and accumulation of CBS in mammalian mitochondria are regulated by an interaction of the heme group and oxygen molecule and this interaction is under the control of Lon protease. A better understanding of whether and how CBS in mammalian mitochondria is ...