2017
DOI: 10.1016/j.marenvres.2017.05.006
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Hepatic transcriptomic profiles from barramundi, Lates calcarifer, as a means of assessing organism health and identifying stressors in rivers in northern Queensland

Abstract: transcriptomic profiles from barramundi, Lates calcarifer, as a means of assessing organism health and identifying stressors in rivers in northern Queensland, Marine Environmental Research (2017),

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Cited by 10 publications
(5 citation statements)
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“…Fish from the agriculturally impacted Tully River had an increased abundance of xenobiotic metabolism transcripts, transcripts involved in the metabolism of lipids and amino acids, and transcripts involved in ATP synthesis, but a decreased abundance of transcripts involved in immune response, relative to those collected from the Daintree River (Hook et al, 2017a). Fish collected from agriculturally impacted rivers during the dry season, when water quality is better, did not show the same transcriptomic patterns, suggesting that the patterns are related to water quality, not habitat alteration (Hook et al, 2017b).…”
Section: A C C E P T E D Accepted Manuscriptmentioning
confidence: 94%
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“…Fish from the agriculturally impacted Tully River had an increased abundance of xenobiotic metabolism transcripts, transcripts involved in the metabolism of lipids and amino acids, and transcripts involved in ATP synthesis, but a decreased abundance of transcripts involved in immune response, relative to those collected from the Daintree River (Hook et al, 2017a). Fish collected from agriculturally impacted rivers during the dry season, when water quality is better, did not show the same transcriptomic patterns, suggesting that the patterns are related to water quality, not habitat alteration (Hook et al, 2017b).…”
Section: A C C E P T E D Accepted Manuscriptmentioning
confidence: 94%
“…As described previously (Hook et al, 2017b), over 97% or the putative contigs in this assembly have an orthologue in the BLAST database, and 8236 could be annotated with Gene Ontology. The differentially abundant contigs were grouped into five functional groups to provide biological context (e.g., Ubrihien et al, 2017): xenobiotic metabolism; oxidative stress, lipid metabolism, glucose metabolism, and immune response (Figure 4).…”
Section: Accepted Manuscriptmentioning
confidence: 97%
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“…In Asian seabass, ESTs and transcriptomes have been generated to address various important biological questions related to aquaculture, such as immune response to pathogens and parasites, 32,54,79,[92][93][94] responses to various stresses [95][96][97][98] and feeds, 99 growth differences and temperature adaptation 100 (Table 3). The first set of 11,431 high-quality cDNA sequences were obtained by sequencing ESTs from nine normalized cDNA libraries using Sanger sequencing and bioinformatics analysis, and was reported in 2011.…”
Section: Ests and Transcriptomesmentioning
confidence: 99%
“…These studies have contributed to a better understanding of the biology of wild barramundi (Zhu et al, 2006b;Yue et al, 2009;Loughnan et al, 2019) and in aquaculture production (Domingos et al, 2013(Domingos et al, , 2014a(Domingos et al, ,b, 2018(Domingos et al, , 2021Loughnan et al, 2013Loughnan et al, , 2016Ravi et al, 2014;Ngoh et al, 2015;Wang et al, 2015b). A number of studies have employed "omics" approaches targeted to better understand molecular pathways and genes involved in L. calcarifer's adaptive stress response (Newton et al, 2013;Hook et al, 2017;Ma et al, 2020;Vij et al, 2020). Other studies investigated immune functions (Xia and Yue, 2010;Xia et al, 2011Xia et al, , 2013Jiang et al, 2014;Liu et al, 2016), QTLs (Wang et al, 2017b) and disease resistance genes (Fu et al, 2013(Fu et al, , 2014Sun et al, 2020).…”
Section: Introductionmentioning
confidence: 99%