During Gram-negative bacterial infections, excessive lipopolysaccharide (LPS) induces inflammation and sepsis via action on immune cells. However, the bulk of LPS can be cleared from circulation by the liver. Liver clearance is thought to be a slow process mediated exclusively by phagocytic resident macrophages, Kupffer cells (KC). However, we discovered that LPS disappears rapidly from the circulation, with a half-life of 2–4 minutes in mice and liver eliminates about three quarters of LPS from blood circulation. Using microscopic techniques, we found that ~75% of fluor-tagged LPS in liver became associated with liver sinusoidal endothelial cells (LSEC) and only ~25% with KC. Notably, the ratio of LSEC-KC associated LPS remained unchanged 45 min after infusion, indicating that LSEC independently processes the LPS. Most interestingly, results of kinetic analysis of LPS bioactivity, using modified limulus amebocyte lysate assay, suggest that recombinant factor-C, an LPS binding protein, competitively inhibits HDL-mediated LPS association with LSEC early in the process. Supporting the previous notion 3 min post-infusion, 75% of infused fluorescently-tagged LPS-HDL complex associates with LSEC, suggesting that HDL facilitates LPS clearance. These results lead us to propose a new paradigm of LSEC and HDL in clearing LPS with a potential to avoid inflammation during sepsis.