Persistent hepatitis B virus infection is a major risk factor for hepatocellular carcinoma, the most frequent cancer in some developing countries. Up to 95% of those infected at birth and 15% of those infected after the neonatal period fail to clear hepatitis B virus, together resulting in Ϸ350 million persistent carriers worldwide. Via a whole genome scan in Gambian families, we have identified a major susceptibility locus as a cluster of class II cytokine receptor genes on chromosome 21q22. Coding changes in two of these genes, the type I IFN receptor gene, IFN-AR2, and the IL-10RB gene that encodes a receptor chain for IL-10-related cytokines including the IFN-s, are associated with viral clearance (haplotype P value ؍ 0.0003), and in vitro assays support functional roles for these variants in receptor signaling.complex trait ͉ IL-10 ͉ interferon ͉ susceptibility ͉ virus T here are Ϸ350 million people with persistent hepatitis B virus (HBV) infection worldwide. Of these infected people, up to one-quarter will die from complications of the infection including cirrhosis and primary liver cancer. However, infection with HBV does not invariably lead to chronic hepatitis: When infection is acquired during childhood, as is normally the case in subSaharan Africa, up to 90% will eliminate the virus spontaneously. When infection is acquired during the early neonatal period from an HBV-infected mother, only 10% of children will eliminate the virus, but this situation, known as vertical transmission, is rare in Africa.Susceptibility to persistent infection is governed by a number of factors, in addition to the age at infection. Twin studies and limited genetic association study data indicate that host genetic background influences the outcome of infection (1). It is likely that genetic susceptibility to persistent HBV infection is polygenic, and that both MHC and non-MHC genes are involved (2).Current treatment for persistent HBV infection is partially effective, expensive, and impractical in developing countries where persistent HBV infection rates are at their highest (3). It is therefore crucial to identify factors that determine whether HBV becomes a self-limiting or persistent infection because these factors may reveal new therapeutic opportunities for patients with chronic HBV infection. This study was conducted to identify genetic determinants of persistent HBV infection by using a genomewide approach.
ResultsTo search for major loci that might have some effect on viral persistence in a highly endemic area, 318 microsatellites were analyzed in 88 independent affected sibling pairs (ASPs) in 61 Gambian families. The most significant evidence of linkage was found on chromosome 21 [logarithm of odds (lod) ϭ 1.66; P ϭ 0.003] (Table 1, which is published as supporting information on the PNAS web site). This locus on chromosome 21 also showed evidence of linkage when a total of 31 markers (with SIBPAIR P value Ͻ0.1) were followed up in a further 106 independent ASPs in 74 families (D21S1252 screens 1 and 2 combined: ...