“…Differential transcription analysis identified 879 and 651 genes that are more transcriptionally active in NP and NR, respectively ( Figure 1E ; p < 0.05, padj < 0.2, normalized counts > 100, log2FC < or > 0 by DESeq2). The genes that are more transcriptionally active in NP than NR (hereafter, referred to as NP-activated genes) are enriched in pathways involved in neutrophil activation, immunity, and cytokine responses ( Figure 1F ), such as IL1B (37), IL6 (38), CCL2 (encoding MCP-1)(39, 40), CCL20 ( 16 ), HIF1A (41), TREM1 (42), PKM (43), CXCR2 (44), CRP (45, 46) , IL32 (47), and CD44 (48) ( Figure 1H ). The genes that are more transcriptionally active in NR than NP (hereafter, referred to as NR-activated genes) are enriched in pathways involved in fatty acid metabolism ( CPT2, ACADL, AIG1, ACAA2, ACSM5, ACOX2, BDH2, HAO2 ) and xenobiotic processes ( CYP2J2 )( 49 )( Figure 1G-H ).…”