We study the positive Hermitian curvature flow of left-invariant metrics on complex 2-step nilpotent Lie groups. In this setting we completely characterize the long-time behaviour of the flow, showing that normalized solutions to the flow subconverge to a non-flat algebraic soliton, in Cheeger-Gromov topology. We also exhibit a uniqueness result for algebraic solitons on such Lie groups.