Background: Organic dyes are used for a wide variety of purposes including their applications in textiles, foods, printing cosmetics and pharmaceuticals. Thus, these are industrially very important and their analysis is always required before putting to particular use. Methods: To develop the extremely efficient thin layer chromatographic system for the resolution of co-existing dyes, the silica gel was modified with the conducting polymer polyaniline. Silica gel and polyaniline modified silica gel were used as stationary phase while the different formulations based on aqueous solutions of ionic liquids such as 1-methyl-imidazolium chloride, 1,2,3-trimethylimidazolium methyl sulphate and 1-ethyl 3-methyl-imidazolium tetrafluoroborate were used as mobile phase to study the migration behaviour of organic dyes.