The surface assembly of 2,3,7,8,12,13,17,18-octaethylporphyrin
(OEP) using silicon tetrachloride as a coupling agent was investigated
using atomic force microscopy (AFM). Nanopatterned films of Si-OEP
were prepared by protocols of colloidal lithography to evaluate the
morphology, thickness, and molecular orientation for samples prepared
on Si(111). The natural self-stacking of porphyrins can pose a challenge
for molecular patterning. When making films on surfaces, porphyrins
will self-associate to form co-planar configurations of random stacks
of molecules. There is a tendency for the flat molecules to orient
spontaneously in a side-on arrangement that is mediated by physisorption
to the substrate as well as by π–π interactions
between macrocycles to form a layered arrangement of packed molecules,
analogous to a stack of coins. When silicon tetrachloride is introduced
to the reaction vessel, the coupling between the surface and porphyrins
is mediated through covalent Si–O bonding. For these studies,
surface structures of Si-OEP were formed that are connected with a
Si–O–Si motif to a silicon atom coordinated to the center
of the porphyrin macrocycles. Protocols of colloidal lithography were
used as a tool to prepare surface structures and films of Si-OEP to
facilitate surface characterizations. Conceptually, by arranging the
macrocycles of porphyrins with defined orientation, local AFM surface
measurements can be enabled to help address mechanistic questions
about how molecules self-assemble and bind to substrates.