The
binding modes of
o
-,
m
-,
and
p
-
trans
-BMPyP with DNA were
studied using their spectroscopic properties. Also, the binding modes
were compared based on the location and number of periphery cationic
methylpyridine ions of the cationic porphyrins. The optical absorption
spectra of the
o
-,
m
-, and
p
-
trans
-BMPyP when bound to DNA presented
red shifts and hypochromicity compared to the optical absorption spectrum
of DNA-free cationic porphyrins.
m
-
trans
-BMPyP–DNA presented the largest red shifts and hypochromicity.
The results of the circular dichroism spectral analysis indicated
positive and negative bisignate absorption bands in the Soret band
of the porphyrins in the case of all concentration ratios of
o
- and
p
-
trans
-BMPyP–DNA,
and two negative absorption bands were observed in
m
-
trans
-BMPyP–DNA. Compared to the size of
the absorption band of the DNA optical absorption spectrum, the results
of the reduced linear (LD
r
) spectral analysis indicated
mainly small sizes of Soret absorption bands (the absorption spectrum
of porphyrins) and positive LD
r
values for
o
- and
p
-
trans
-BMPyP–DNA.
In consideration of several of such spectroscopic properties, the
binding of
o
- and
p
-
trans
-BMPyP with DNA can be said to be distant to insertion modes. Although
the case of
m
-
trans
-BMPyP to DNA
is an insertion mode, the
m
-
trans
-BMPyP molecular surface presented much tilt within the intercalation
pocket. The results of comparing the binding modes of TMPyP having
four periphery cationic methylpyridine ions of cationic porphyrin
indicated that regardless of the number of periphery cationic methylpyridine
ions of cationic porphyrin, in the case of the ortho-position, nonplanarity
due to steric hindrance of the periphery cationic methylpyridine ions
presented outside or groove-binding modes indicative of interaction
with DNA phosphates. Unlike the ortho-position, the para-position
presented different binding modes based on the number of periphery
cationic methylpyridine ions. Only cationic porphyrins having four
periphery cationic methylpyridine ions were inserted into the DNA.
Lastly, regardless of the number of periphery cationic methylpyridine
ions, all meta-positions were inserted into the DNA. This indicated
that at the least the location and the number of periphery cationic
methylpyridine ions of the porphyrins used in this experiment were
important elements that determine insert...