Temporal scales of variability for the partial pressure of CO 2 (pCO 2 ) in the surface waters of two stratified Mediterranean reservoirs were examined through the temporal decomposition of 5 month time series with hourly sampling frequency. pCO 2 time series included similar patterns of variability at daily, biweekly, and seasonal scales regardless of the difference in amplitude of the pCO 2 variation in the two reservoirs studied. Daily variability was strongly related to the day-night cycles of metabolic activity, accounting for about one third of the total amplitude in pCO 2 variation. At a biweekly scale, wind forcing led to higher rates of air-water CO 2 exchange and subsequently temporary partial mixing events associated to relevant increase of CO 2 concentration in surface waters. Seasonal variability accounted for one third of the amplitude of the pCO 2 variability and was coupled to the seasonal dynamics of water temperature and thermal stratification of the water column. Our results provide evidence that CO 2 emission from stratified water bodies shows significant variability at daily, biweekly, and seasonal scales; all of which should be taken into consideration in the analyses of the carbon fluxes. The wind-induced mixing events, operating at temporal scales between daily and seasonal cycles, may become a major factor controlling the pCO 2 dynamics. Hence, some of the most common models for computing CO 2 fluxes from pCO 2 were not able to reproduce the biweekly response patterns of CO 2 emissions to wind forcing.