Inactivation by allelic exchange in clinical isolates of the emerging nosocomial pathogen Enterococcus faecium has been hindered by lack of efficient tools, and, in this study, transformation of clinical isolates was found to be particularly problematic. For this reason, a vector for allelic replacement (pTEX5500ts) was constructed that includes (i) the pWV01-based gram-positive repAts replication region, which is known to confer a high degree of temperature intolerance, (ii) Escherichia coli oriR from pUC18, (iii) two extended multiple-cloning sites located upstream and downstream of one of the marker genes for efficient cloning of flanking regions for double-crossover mutagenesis, (iv) transcriptional terminator sites to terminate undesired readthrough, and (v) a synthetic extended promoter region containing the cat gene for allelic exchange and a high-level gentamicin resistance gene, aph(2)-Id, to distinguish double-crossover recombination, both of which are functional in gram-positive and gram-negative backgrounds. To demonstrate the functionality of this vector, the vector was used to construct an acm (encoding an adhesin to collagen from E. faecium) deletion mutant of a poorly transformable multidrug-resistant E. faecium endocarditis isolate, TX0082. The acm-deleted strain, TX6051 (TX0082⌬acm), was shown to lack Acm on its surface, which resulted in the abolishment of the collagen adherence phenotype observed in TX0082. A mobilizable derivative (pTEX5501ts) that contains oriT of Tn916 to facilitate conjugative transfer from the transformable E. faecalis strain JH2Sm::Tn916 to E. faecium was also constructed. Using this vector, the acm gene of a nonelectroporable E. faecium wound isolate was successfully interrupted. Thus, pTEX5500ts and its mobilizable derivative demonstrated their roles as important tools by helping to create the first reported allelic replacement in E. faecium; the constructed this acm deletion mutant will be useful for assessing the role of acm in E. faecium pathogenesis using animal models.In today's world, enterococci, especially some strains of Enterococcus faecium, are best known in the clinical setting as multidrug-resistant opportunists causing difficult-to-treat hospital-acquired infections, including infective endocarditis (32,33). While in the past clinical isolates of Enterococcus faecalis outnumbered those of E. faecium by approximately 9:1, this ratio has changed in some U.S. hospitals to ϳ6:4, and this increase parallels the increase in vancomycin resistance of E. faecium (20,33,58). An important theme relating to strains causing E. faecium infections in hospitals today is that, in addition to acquiring antibiotic resistances, they seem to have lost the harmless, commensal nature of the strains colonizing healthy individuals in the community and often contain either new genes (e.g., esp fm , encoding a potential enterococcal surface protein, or hyl, encoding a potential hyaluronidase [16,25,44,62]) or a functional form of genes (e.g., acm, encoding a collagen adhesin [37])...